Analysis of interatomic Contacts of Structural Units in PDB entry:
6WYS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6WYS entry

There are 3 chains in PDB entry 6WYS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 754GLU 950
B
 HIS 752ASP 949
C
 LYS 746PRO 948
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 6WYS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
807 829Right-handed alpha
Helix 2
AA2
A
833 838Right-handed alpha
Helix 3
AA3
A
856 870Right-handed alpha
Helix 4
AA4
A
894 905Right-handed alpha
Helix 5
AA5
A
916 922Right-handed alpha
Helix 6
AA6
A
924 929Right-handed alpha
Helix 7
AA7
A
938 947Right-handed alpha
Helix 8
AA8
B
807 829Right-handed alpha
Helix 9
AA9
B
833 838Right-handed alpha
Helix 10
AB1
B
856 870Right-handed alpha
Helix 11
AB2
B
894 905Right-handed alpha
Helix 12
AB3
B
916 922Right-handed alpha
Helix 13
AB4
B
924 929Right-handed alpha
Helix 14
AB5
B
938 947Right-handed alpha
Helix 15
AB6
C
807 829Right-handed alpha
Helix 16
AB7
C
833 838Right-handed alpha
Helix 17
AB8
C
852 855Right-handed 310
Helix 18
AB9
C
856 869Right-handed alpha
Helix 19
AC1
C
894 905Right-handed alpha
Helix 20
AC2
C
916 922Right-handed alpha
Helix 21
AC3
C
924 929Right-handed alpha
Helix 22
AC4
C
938 947Right-handed alpha
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There are 9 sheets in PDB entry 6WYS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
764 771first strand
Strand 2
A
774 784anti-parallel
Strand 3
A
839 843anti-parallel
Strand 4
A
799 803parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
877 879first strand
Strand 2
A
909 913parallel
Strand 3
A
932 936parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
882 883first strand
Strand 2
A
889 890anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
764 771first strand
Strand 2
B
774 784anti-parallel
Strand 3
B
839 843anti-parallel
Strand 4
B
799 803parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
877 879first strand
Strand 2
B
909 913parallel
Strand 3
B
932 936parallel
Strand 4
C
747 750parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
882 883first strand
Strand 2
B
889 890anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
764 770first strand
Strand 2
C
775 784anti-parallel
Strand 3
C
840 843anti-parallel
Strand 4
C
800 803parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
878 879first strand
Strand 2
C
909 913parallel
Strand 3
C
932 936parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
882 883first strand
Strand 2
C
889 890anti-parallel
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