Analysis of interatomic Contacts of Structural Units in PDB entry:
6WYT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6WYT entry

There are 2 chains in PDB entry 6WYT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
H	GLU 1	SER 230
L	SER 1	GLU 234

There are 8 helices in PDB entry 6WYT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	H	82	84	Right-handed 310
Helix 2	AA2	H	171	173	Right-handed 310
Helix 3	AA3	H	202	204	Right-handed 310
Helix 4	AA4	H	216	219	Right-handed 310
Helix 5	AA5	L	27	37	Right-handed 310
Helix 6	AA6	L	95	99	Right-handed 310
Helix 7	AA7	L	142	148	Right-handed alpha
Helix 8	AA8	L	205	212	Right-handed alpha

There are 12 sheets in PDB entry 6WYT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	19	26	anti-parallel
Strand 3	H	86	91	anti-parallel
Strand 4	H	76	81	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	65	67	first strand
Strand 2	H	51	56	anti-parallel
Strand 3	H	38	44	anti-parallel
Strand 4	H	100	107	anti-parallel
Strand 5	H	115	118	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	65	67	first strand
Strand 2	H	51	56	anti-parallel
Strand 3	H	38	44	anti-parallel
Strand 4	H	100	107	anti-parallel
Strand 5	H	122	124	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	135	142	first strand
Strand 2	H	150	160	anti-parallel
Strand 3	H	191	200	anti-parallel
Strand 4	H	178	180	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	135	142	first strand
Strand 2	H	150	160	anti-parallel
Strand 3	H	191	200	anti-parallel
Strand 4	H	184	185	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	166	169	first strand
Strand 2	H	210	215	anti-parallel
Strand 3	H	220	225	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	5	6	first strand
Strand 2	L	19	24	anti-parallel
Strand 3	L	86	91	anti-parallel
Strand 4	L	76	83	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	13	first strand
Strand 2	L	122	126	parallel
Strand 3	L	100	107	anti-parallel
Strand 4	L	38	44	anti-parallel
Strand 5	L	51	54	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	9	13	first strand
Strand 2	L	122	126	parallel
Strand 3	L	100	107	anti-parallel
Strand 4	L	116	118	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	135	139	first strand
Strand 2	L	151	160	anti-parallel
Strand 3	L	196	204	anti-parallel
Strand 4	L	183	185	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	135	139	first strand
Strand 2	L	151	160	anti-parallel
Strand 3	L	196	204	anti-parallel
Strand 4	L	189	190	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	177	178	first strand
Strand 2	L	166	171	anti-parallel
Strand 3	L	215	221	anti-parallel
Strand 4	L	224	230	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6WYT

Analysis of interatomic Contacts of Structural Units in PDB entry:
6WYT