Analysis of interatomic Contacts of Structural Units in PDB entry:
6WYY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6WYY entry

There are 4 chains in PDB entry 6WYY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 8	TYR 337
B	LYS 8	TYR 337
C	LYS 8	TYR 337
D	LYS 8	TYR 337

There are 58 helices in PDB entry 6WYY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	40	48	Right-handed alpha
Helix 2	AA2	A	49	54	Right-handed 310
Helix 3	AA3	A	66	70	Right-handed 310
Helix 4	AA4	A	71	88	Right-handed alpha
Helix 5	AA5	A	102	114	Right-handed alpha
Helix 6	AA6	A	135	148	Right-handed alpha
Helix 7	AA7	A	149	153	Right-handed 310
Helix 8	AA8	A	207	211	Right-handed 310
Helix 9	AA9	A	214	218	Right-handed 310
Helix 10	AB1	A	235	244	Right-handed alpha
Helix 11	AB2	A	263	273	Right-handed alpha
Helix 12	AB3	A	296	301	Right-handed alpha
Helix 13	AB4	A	309	321	Right-handed alpha
Helix 14	AB5	A	326	337	Right-handed alpha
Helix 15	AB6	B	41	48	Right-handed alpha
Helix 16	AB7	B	49	54	Right-handed 310
Helix 17	AB8	B	66	70	Right-handed 310
Helix 18	AB9	B	71	87	Right-handed alpha
Helix 19	AC1	B	102	114	Right-handed alpha
Helix 20	AC2	B	135	148	Right-handed alpha
Helix 21	AC3	B	149	153	Right-handed 310
Helix 22	AC4	B	207	211	Right-handed 310
Helix 23	AC5	B	214	218	Right-handed 310
Helix 24	AC6	B	235	244	Right-handed alpha
Helix 25	AC7	B	263	273	Right-handed alpha
Helix 26	AC8	B	296	301	Right-handed alpha
Helix 27	AC9	B	309	321	Right-handed alpha
Helix 28	AD1	B	326	337	Right-handed alpha
Helix 29	AD2	C	20	23	Right-handed 310
Helix 30	AD3	C	40	47	Right-handed alpha
Helix 31	AD4	C	50	55	Right-handed alpha
Helix 32	AD5	C	66	70	Right-handed 310
Helix 33	AD6	C	71	87	Right-handed alpha
Helix 34	AD7	C	102	114	Right-handed alpha
Helix 35	AD8	C	135	148	Right-handed alpha
Helix 36	AD9	C	149	153	Right-handed 310
Helix 37	AE1	C	207	211	Right-handed 310
Helix 38	AE2	C	214	218	Right-handed 310
Helix 39	AE3	C	235	244	Right-handed alpha
Helix 40	AE4	C	263	273	Right-handed alpha
Helix 41	AE5	C	296	301	Right-handed alpha
Helix 42	AE6	C	309	322	Right-handed alpha
Helix 43	AE7	C	326	337	Right-handed alpha
Helix 44	AE8	D	20	23	Right-handed 310
Helix 45	AE9	D	40	47	Right-handed alpha
Helix 46	AF1	D	50	55	Right-handed alpha
Helix 47	AF2	D	66	70	Right-handed 310
Helix 48	AF3	D	71	87	Right-handed alpha
Helix 49	AF4	D	102	114	Right-handed alpha
Helix 50	AF5	D	135	148	Right-handed alpha
Helix 51	AF6	D	149	153	Right-handed 310
Helix 52	AF7	D	207	211	Right-handed 310
Helix 53	AF8	D	214	218	Right-handed 310
Helix 54	AF9	D	235	244	Right-handed alpha
Helix 55	AG1	D	263	273	Right-handed alpha
Helix 56	AG2	D	296	301	Right-handed alpha
Helix 57	AG3	D	309	322	Right-handed alpha
Helix 58	AG4	D	326	337	Right-handed alpha

There are 14 sheets in PDB entry 6WYY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	65	first strand
Strand 2	A	11	18	parallel
Strand 3	A	93	97	parallel
Strand 4	A	120	123	parallel
Strand 5	A	158	159	parallel
Strand 6	A	164	167	anti-parallel
Strand 7	A	190	193	anti-parallel
Strand 8	A	196	199	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	172	173	first strand
Strand 2	A	182	183	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	201	203	first strand
Strand 2	D	201	203	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	224	228	first strand
Strand 2	A	248	253	parallel
Strand 3	A	276	281	parallel
Strand 4	A	303	304	parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	65	first strand
Strand 2	B	11	18	parallel
Strand 3	B	93	97	parallel
Strand 4	B	120	123	parallel
Strand 5	B	158	159	parallel
Strand 6	B	164	167	anti-parallel
Strand 7	B	190	193	anti-parallel
Strand 8	B	196	199	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	172	173	first strand
Strand 2	B	182	183	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	201	203	first strand
Strand 2	C	201	203	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	224	228	first strand
Strand 2	B	248	253	parallel
Strand 3	B	276	281	parallel
Strand 4	B	303	304	parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	56	65	first strand
Strand 2	C	11	18	parallel
Strand 3	C	93	97	parallel
Strand 4	C	120	123	parallel
Strand 5	C	158	159	parallel
Strand 6	C	164	167	anti-parallel
Strand 7	C	190	193	anti-parallel
Strand 8	C	196	199	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	172	173	first strand
Strand 2	C	182	183	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	224	228	first strand
Strand 2	C	248	253	parallel
Strand 3	C	276	281	parallel
Strand 4	C	303	304	parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	56	65	first strand
Strand 2	D	11	18	parallel
Strand 3	D	93	97	parallel
Strand 4	D	120	123	parallel
Strand 5	D	158	159	parallel
Strand 6	D	164	167	anti-parallel
Strand 7	D	190	193	anti-parallel
Strand 8	D	196	199	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	172	173	first strand
Strand 2	D	182	183	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	224	228	first strand
Strand 2	D	248	253	parallel
Strand 3	D	276	281	parallel
Strand 4	D	303	304	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6WYY

Analysis of interatomic Contacts of Structural Units in PDB entry:
6WYY