Analysis of interatomic Contacts of Structural Units in PDB entry:
6X04

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6X04 entry

There are 6 chains in PDB entry 6X04 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 61	GLU 481
B	VAL 2	SER 117
C	PHE 61	GLU 481
D	VAL 2	SER 117
E	VAL 60	GLU 481
F	VAL 2	SER 117

There are 24 helices in PDB entry 6X04. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	177	181	Right-handed 310
Helix 2	AA2	A	312	322	Right-handed alpha
Helix 3	AA3	A	324	328	Right-handed 310
Helix 4	AA4	A	401	406	Right-handed 310
Helix 5	AA5	B	60	63	Right-handed 310
Helix 6	AA6	B	85	89	Right-handed 310
Helix 7	AA7	C	312	322	Right-handed alpha
Helix 8	AA8	C	324	328	Right-handed 310
Helix 9	AA9	D	85	89	Right-handed 310
Helix 10	AB1	E	312	322	Right-handed alpha
Helix 11	AB2	E	324	328	Right-handed 310
Helix 12	AB3	F	85	89	Right-handed 310
Helix 13	AB4	G	177	181	Right-handed 310
Helix 14	AB5	G	312	321	Right-handed alpha
Helix 15	AB6	G	324	328	Right-handed 310
Helix 16	AB7	H	60	63	Right-handed 310
Helix 17	AB8	H	85	89	Right-handed 310
Helix 18	AB9	I	312	322	Right-handed alpha
Helix 19	AC1	I	324	328	Right-handed 310
Helix 20	AC2	J	60	63	Right-handed 310
Helix 21	AC3	J	85	89	Right-handed 310
Helix 22	AC4	K	312	322	Right-handed alpha
Helix 23	AC5	K	324	328	Right-handed 310
Helix 24	AC6	L	85	89	Right-handed 310

There are 49 sheets in PDB entry 6X04. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	70	first strand
Strand 2	A	474	479	anti-parallel
Strand 3	A	464	468	anti-parallel
Strand 4	A	457	460	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	91	first strand
Strand 2	A	96	100	anti-parallel
Strand 3	A	104	109	anti-parallel
Strand 4	A	120	123	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	137	140	first strand
Strand 2	A	164	168	anti-parallel
Strand 3	A	171	175	anti-parallel
Strand 4	A	194	197	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	208	213	first strand
Strand 2	A	219	223	anti-parallel
Strand 3	A	228	234	anti-parallel
Strand 4	A	240	247	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	267	277	first strand
Strand 2	A	280	287	anti-parallel
Strand 3	A	291	298	anti-parallel
Strand 4	A	305	311	anti-parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	332	338	first strand
Strand 2	A	344	353	anti-parallel
Strand 3	A	358	369	anti-parallel
Strand 4	A	374	382	anti-parallel
Strand 5	B	103	108	anti-parallel
Strand 6	B	90	100	anti-parallel
Strand 7	B	33	39	anti-parallel
Strand 8	B	46	52	anti-parallel
Strand 9	B	55	58	anti-parallel

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There are 12 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	332	338	first strand
Strand 2	A	344	353	anti-parallel
Strand 3	A	358	369	anti-parallel
Strand 4	A	374	382	anti-parallel
Strand 5	B	103	108	anti-parallel
Strand 6	B	90	100	anti-parallel
Strand 7	B	112	117	anti-parallel
Strand 8	B	10	13	parallel
Strand 9	E	444	448	parallel
Strand 10	E	423	427	anti-parallel
Strand 11	E	417	420	anti-parallel
Strand 12	E	398	400	anti-parallel

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There are 12 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	398	400	first strand
Strand 2	A	413	420	anti-parallel
Strand 3	A	423	430	anti-parallel
Strand 4	A	444	448	anti-parallel
Strand 5	D	10	12	parallel
Strand 6	D	112	116	parallel
Strand 7	D	90	100	anti-parallel
Strand 8	D	103	108	anti-parallel
Strand 9	C	374	382	anti-parallel
Strand 10	C	358	369	anti-parallel
Strand 11	C	344	353	anti-parallel
Strand 12	C	332	338	anti-parallel

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There are 10 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	398	400	first strand
Strand 2	A	413	420	anti-parallel
Strand 3	A	423	430	anti-parallel
Strand 4	A	444	448	anti-parallel
Strand 5	D	10	12	parallel
Strand 6	D	112	116	parallel
Strand 7	D	90	100	anti-parallel
Strand 8	D	33	39	anti-parallel
Strand 9	D	46	52	anti-parallel
Strand 10	D	55	58	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	7	first strand
Strand 2	B	18	22	anti-parallel
Strand 3	B	77	81	anti-parallel
Strand 4	B	66	70	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	67	72	first strand
Strand 2	C	474	479	anti-parallel
Strand 3	C	464	469	anti-parallel
Strand 4	C	455	460	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	87	91	first strand
Strand 2	C	96	100	anti-parallel
Strand 3	C	105	109	anti-parallel
Strand 4	C	120	122	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	137	140	first strand
Strand 2	C	164	168	anti-parallel
Strand 3	C	171	175	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	208	214	first strand
Strand 2	C	218	223	anti-parallel
Strand 3	C	228	232	anti-parallel
Strand 4	C	243	247	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	267	272	first strand
Strand 2	C	280	287	anti-parallel
Strand 3	C	291	298	anti-parallel
Strand 4	C	305	311	anti-parallel

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There are 12 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	398	400	first strand
Strand 2	C	413	419	anti-parallel
Strand 3	C	423	430	anti-parallel
Strand 4	C	444	448	anti-parallel
Strand 5	F	10	12	parallel
Strand 6	F	112	116	parallel
Strand 7	F	90	100	anti-parallel
Strand 8	F	103	108	anti-parallel
Strand 9	E	374	382	anti-parallel
Strand 10	E	358	369	anti-parallel
Strand 11	E	344	353	anti-parallel
Strand 12	E	332	338	anti-parallel

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There are 10 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	398	400	first strand
Strand 2	C	413	419	anti-parallel
Strand 3	C	423	430	anti-parallel
Strand 4	C	444	448	anti-parallel
Strand 5	F	10	12	parallel
Strand 6	F	112	116	parallel
Strand 7	F	90	100	anti-parallel
Strand 8	F	33	39	anti-parallel
Strand 9	F	45	52	anti-parallel
Strand 10	F	55	58	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	7	first strand
Strand 2	D	18	22	anti-parallel
Strand 3	D	77	81	anti-parallel
Strand 4	D	66	70	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	67	70	first strand
Strand 2	E	474	479	anti-parallel
Strand 3	E	464	469	anti-parallel
Strand 4	E	455	460	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	87	91	first strand
Strand 2	E	96	100	anti-parallel
Strand 3	E	105	109	anti-parallel
Strand 4	E	120	122	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	137	140	first strand
Strand 2	E	164	168	anti-parallel
Strand 3	E	171	175	anti-parallel
Strand 4	E	193	197	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	208	213	first strand
Strand 2	E	219	223	anti-parallel
Strand 3	E	228	234	anti-parallel
Strand 4	E	240	247	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	267	272	first strand
Strand 2	E	280	287	anti-parallel
Strand 3	E	291	298	anti-parallel
Strand 4	E	305	311	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	7	first strand
Strand 2	F	18	25	anti-parallel
Strand 3	F	76	81	anti-parallel
Strand 4	F	66	70	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	60	63	first strand
Strand 2	G	67	70	anti-parallel
Strand 3	G	474	479	anti-parallel
Strand 4	G	464	469	anti-parallel
Strand 5	G	455	460	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	87	91	first strand
Strand 2	G	96	100	anti-parallel
Strand 3	G	104	109	anti-parallel
Strand 4	G	120	123	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	137	140	first strand
Strand 2	G	164	168	anti-parallel
Strand 3	G	171	175	anti-parallel
Strand 4	G	193	197	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	208	214	first strand
Strand 2	G	218	223	anti-parallel
Strand 3	G	228	234	anti-parallel
Strand 4	G	240	247	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	267	277	first strand
Strand 2	G	280	287	anti-parallel
Strand 3	G	291	297	anti-parallel
Strand 4	G	305	311	anti-parallel

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There are 9 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	332	338	first strand
Strand 2	G	344	353	anti-parallel
Strand 3	G	358	369	anti-parallel
Strand 4	G	374	382	anti-parallel
Strand 5	H	103	108	anti-parallel
Strand 6	H	90	100	anti-parallel
Strand 7	H	33	39	anti-parallel
Strand 8	H	46	52	anti-parallel
Strand 9	H	55	58	anti-parallel

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There are 12 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	332	338	first strand
Strand 2	G	344	353	anti-parallel
Strand 3	G	358	369	anti-parallel
Strand 4	G	374	382	anti-parallel
Strand 5	H	103	108	anti-parallel
Strand 6	H	90	100	anti-parallel
Strand 7	H	112	117	anti-parallel
Strand 8	H	10	13	parallel
Strand 9	K	443	448	parallel
Strand 10	K	423	429	anti-parallel
Strand 11	K	414	419	anti-parallel
Strand 12	K	398	400	anti-parallel

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There are 10 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	398	400	first strand
Strand 2	G	416	420	anti-parallel
Strand 3	G	423	427	anti-parallel
Strand 4	G	444	448	anti-parallel
Strand 5	J	10	12	parallel
Strand 6	J	112	116	parallel
Strand 7	J	90	100	anti-parallel
Strand 8	J	33	39	anti-parallel
Strand 9	J	46	52	anti-parallel
Strand 10	J	55	58	anti-parallel

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There are 8 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	398	400	first strand
Strand 2	G	416	420	anti-parallel
Strand 3	G	423	427	anti-parallel
Strand 4	G	444	448	anti-parallel
Strand 5	J	10	12	parallel
Strand 6	J	112	116	parallel
Strand 7	J	90	100	anti-parallel
Strand 8	J	103	108	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	76	81	anti-parallel
Strand 4	H	66	70	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	67	70	first strand
Strand 2	I	474	479	anti-parallel
Strand 3	I	464	469	anti-parallel
Strand 4	I	455	460	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	87	91	first strand
Strand 2	I	96	100	anti-parallel
Strand 3	I	104	109	anti-parallel
Strand 4	I	120	123	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	137	140	first strand
Strand 2	I	164	168	anti-parallel
Strand 3	I	171	175	anti-parallel
Strand 4	I	194	197	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	208	214	first strand
Strand 2	I	218	223	anti-parallel
Strand 3	I	228	234	anti-parallel
Strand 4	I	240	247	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	267	272	first strand
Strand 2	I	280	287	anti-parallel
Strand 3	I	291	298	anti-parallel
Strand 4	I	305	311	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	332	338	first strand
Strand 2	I	344	353	anti-parallel
Strand 3	I	358	369	anti-parallel
Strand 4	I	374	382	anti-parallel

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There are 12 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	398	400	first strand
Strand 2	I	414	420	anti-parallel
Strand 3	I	423	429	anti-parallel
Strand 4	I	444	448	anti-parallel
Strand 5	L	10	12	parallel
Strand 6	L	112	116	parallel
Strand 7	L	90	100	anti-parallel
Strand 8	L	103	108	anti-parallel
Strand 9	K	374	382	anti-parallel
Strand 10	K	358	369	anti-parallel
Strand 11	K	344	353	anti-parallel
Strand 12	K	332	338	anti-parallel

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There are 10 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	398	400	first strand
Strand 2	I	414	420	anti-parallel
Strand 3	I	423	429	anti-parallel
Strand 4	I	444	448	anti-parallel
Strand 5	L	10	12	parallel
Strand 6	L	112	116	parallel
Strand 7	L	90	100	anti-parallel
Strand 8	L	33	39	anti-parallel
Strand 9	L	46	52	anti-parallel
Strand 10	L	55	58	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	3	7	first strand
Strand 2	J	18	25	anti-parallel
Strand 3	J	76	81	anti-parallel
Strand 4	J	66	70	anti-parallel

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There are 5 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	62	63	first strand
Strand 2	K	67	70	anti-parallel
Strand 3	K	474	479	anti-parallel
Strand 4	K	464	469	anti-parallel
Strand 5	K	455	460	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	87	91	first strand
Strand 2	K	96	100	anti-parallel
Strand 3	K	105	109	anti-parallel
Strand 4	K	120	122	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	137	140	first strand
Strand 2	K	164	168	anti-parallel
Strand 3	K	171	175	anti-parallel
Strand 4	K	194	197	anti-parallel

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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	208	214	first strand
Strand 2	K	218	223	anti-parallel
Strand 3	K	228	234	anti-parallel
Strand 4	K	240	247	anti-parallel

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There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	267	272	first strand
Strand 2	K	281	287	anti-parallel
Strand 3	K	291	297	anti-parallel
Strand 4	K	305	311	anti-parallel

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There are 4 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	6	7	first strand
Strand 2	L	18	22	anti-parallel
Strand 3	L	77	81	anti-parallel
Strand 4	L	66	70	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6X04

Analysis of interatomic Contacts of Structural Units in PDB entry:
6X04