Analysis of interatomic Contacts of Structural Units in PDB entry:
6X08

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6X08 entry

There are 3 chains in PDB entry 6X08 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ALA 347
B	ILE 47	ILE 556
K	GLN 1	SER 125

There are 29 helices in PDB entry 6X08. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	65	69	Right-handed 310
Helix 2	AA2	A	118	122	Right-handed 310
Helix 3	AA3	B	101	119	Right-handed alpha
Helix 4	AA4	B	139	165	Right-handed alpha
Helix 5	AA5	B	169	190	Right-handed alpha
Helix 6	AA6	B	196	199	Right-handed 310
Helix 7	AA7	B	200	216	Right-handed alpha
Helix 8	AA8	B	220	230	Right-handed alpha
Helix 9	AA9	B	242	254	Right-handed alpha
Helix 10	AB1	B	257	268	Right-handed alpha
Helix 11	AB2	B	269	277	Right-handed alpha
Helix 12	AB3	B	278	294	Right-handed alpha
Helix 13	AB4	B	299	319	Right-handed alpha
Helix 14	AB5	B	325	341	Right-handed alpha
Helix 15	AB6	B	342	349	Right-handed alpha
Helix 16	AB7	B	352	364	Right-handed alpha
Helix 17	AB8	B	367	369	Right-handed 310
Helix 18	AB9	B	370	380	Right-handed alpha
Helix 19	AC1	B	390	399	Right-handed alpha
Helix 20	AC2	B	404	413	Right-handed alpha
Helix 21	AC3	B	413	427	Right-handed alpha
Helix 22	AC4	B	461	475	Right-handed alpha
Helix 23	AC5	B	481	491	Right-handed alpha
Helix 24	AC6	B	496	508	Right-handed alpha
Helix 25	AC7	B	509	511	Right-handed 310
Helix 26	AC8	B	518	529	Right-handed alpha
Helix 27	AC9	B	531	543	Right-handed alpha
Helix 28	AD1	B	543	549	Right-handed alpha
Helix 29	AD2	K	87	91	Right-handed 310

There are 9 sheets in PDB entry 6X08. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	5	first strand
Strand 2	B	89	92	anti-parallel
Strand 3	B	79	82	anti-parallel
Strand 4	B	67	70	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	17	first strand
Strand 2	A	23	28	anti-parallel
Strand 3	A	33	38	anti-parallel
Strand 4	A	45	49	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	63	first strand
Strand 2	A	71	76	anti-parallel
Strand 3	A	81	86	anti-parallel
Strand 4	A	98	104	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	111	116	first strand
Strand 2	A	124	129	anti-parallel
Strand 3	A	133	139	anti-parallel
Strand 4	A	148	155	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	173	first strand
Strand 2	A	182	187	anti-parallel
Strand 3	A	190	196	anti-parallel
Strand 4	A	202	207	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	215	221	first strand
Strand 2	A	229	235	anti-parallel
Strand 3	A	240	245	anti-parallel
Strand 4	A	294	300	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	307	312	first strand
Strand 2	A	319	323	anti-parallel
Strand 3	A	328	333	anti-parallel
Strand 4	A	339	345	anti-parallel
Strand 5	B	48	49	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	6	7	first strand
Strand 2	K	18	23	anti-parallel
Strand 3	K	78	83	anti-parallel
Strand 4	K	68	72	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	10	12	first strand
Strand 2	K	119	123	parallel
Strand 3	K	92	97	anti-parallel
Strand 4	K	35	39	anti-parallel
Strand 5	K	45	50	anti-parallel
Strand 6	K	59	60	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6X08

Analysis of interatomic Contacts of Structural Units in PDB entry:
6X08