Analysis of interatomic Contacts of Structural Units in PDB entry:
6X0M

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6X0M entry

There are 8 chains in PDB entry 6X0M (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
O	ARG 38	LEU 344
P	GLY 77	TRP 570
o	LEU 37	LEU 344
p	ALA 79	TRP 570
I	C -83	C -72
J	G 72	G 83
i	G 73	G 83
j	C -83	C -73

There are 55 helices in PDB entry 6X0M. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	O	38	46	Right-handed alpha
Helix 2	AA2	O	82	88	Right-handed alpha
Helix 3	AA3	O	101	105	Right-handed 310
Helix 4	AA4	O	160	172	Right-handed alpha
Helix 5	AA5	O	207	216	Right-handed alpha
Helix 6	AA6	O	244	257	Right-handed alpha
Helix 7	AA7	O	260	268	Right-handed alpha
Helix 8	AA8	O	268	284	Right-handed alpha
Helix 9	AA9	O	286	301	Right-handed alpha
Helix 10	AB1	O	302	304	Right-handed 310
Helix 11	AB2	O	305	320	Right-handed alpha
Helix 12	AB3	O	322	335	Right-handed alpha
Helix 13	AB4	P	155	172	Right-handed alpha
Helix 14	AB5	P	222	234	Right-handed alpha
Helix 15	AB6	P	234	245	Right-handed alpha
Helix 16	AB7	P	258	278	Right-handed alpha
Helix 17	AB8	P	282	296	Right-handed alpha
Helix 18	AB9	P	310	334	Right-handed alpha
Helix 19	AC1	P	343	353	Right-handed alpha
Helix 20	AC2	P	363	376	Right-handed alpha
Helix 21	AC3	P	398	403	Right-handed alpha
Helix 22	AC4	P	421	429	Right-handed alpha
Helix 23	AC5	P	438	442	Right-handed 310
Helix 24	AC6	P	453	459	Right-handed alpha
Helix 25	AC7	P	460	462	Right-handed 310
Helix 26	AC8	P	512	515	Right-handed 310
Helix 27	AC9	P	550	552	Right-handed 310
Helix 28	AD1	o	38	46	Right-handed alpha
Helix 29	AD2	o	82	88	Right-handed alpha
Helix 30	AD3	o	160	169	Right-handed alpha
Helix 31	AD4	o	207	216	Right-handed alpha
Helix 32	AD5	o	244	257	Right-handed alpha
Helix 33	AD6	o	260	268	Right-handed alpha
Helix 34	AD7	o	268	284	Right-handed alpha
Helix 35	AD8	o	287	301	Right-handed alpha
Helix 36	AD9	o	302	304	Right-handed 310
Helix 37	AE1	o	305	320	Right-handed alpha
Helix 38	AE2	o	322	335	Right-handed alpha
Helix 39	AE3	p	155	172	Right-handed alpha
Helix 40	AE4	p	222	233	Right-handed alpha
Helix 41	AE5	p	234	245	Right-handed alpha
Helix 42	AE6	p	258	278	Right-handed alpha
Helix 43	AE7	p	282	296	Right-handed alpha
Helix 44	AE8	p	310	334	Right-handed alpha
Helix 45	AE9	p	343	353	Right-handed alpha
Helix 46	AF1	p	363	376	Right-handed alpha
Helix 47	AF2	p	378	382	Right-handed 310
Helix 48	AF3	p	398	403	Right-handed alpha
Helix 49	AF4	p	421	429	Right-handed alpha
Helix 50	AF5	p	438	442	Right-handed 310
Helix 51	AF6	p	453	459	Right-handed alpha
Helix 52	AF7	p	460	462	Right-handed 310
Helix 53	AF8	p	489	494	Right-handed 310
Helix 54	AF9	p	512	515	Right-handed 310
Helix 55	AG1	p	550	552	Right-handed 310

There are 16 sheets in PDB entry 6X0M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	79	80	first strand
Strand 2	O	115	120	anti-parallel
Strand 3	O	127	132	anti-parallel
Strand 4	O	142	147	anti-parallel
Strand 5	O	155	156	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	92	94	first strand
Strand 2	P	115	126	anti-parallel
Strand 3	P	132	139	anti-parallel
Strand 4	P	146	151	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	92	94	first strand
Strand 2	P	115	126	anti-parallel
Strand 3	P	103	110	anti-parallel
Strand 4	P	189	191	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	96	97	first strand
Strand 2	P	100	101	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	355	358	first strand
Strand 2	P	384	395	anti-parallel
Strand 3	P	554	566	anti-parallel
Strand 4	P	469	478	anti-parallel
Strand 5	P	410	416	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	448	451	first strand
Strand 2	P	545	548	anti-parallel
Strand 3	P	501	504	anti-parallel
Strand 4	P	482	485	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	528	530	first strand
Strand 2	P	506	510	anti-parallel
Strand 3	P	541	543	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	516	518	first strand
Strand 2	P	521	523	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	o	79	80	first strand
Strand 2	o	115	120	anti-parallel
Strand 3	o	127	132	anti-parallel
Strand 4	o	142	147	anti-parallel
Strand 5	o	155	156	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	p	92	94	first strand
Strand 2	p	115	126	anti-parallel
Strand 3	p	132	139	anti-parallel
Strand 4	p	146	151	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	p	92	94	first strand
Strand 2	p	115	126	anti-parallel
Strand 3	p	103	110	anti-parallel
Strand 4	p	189	191	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	p	96	97	first strand
Strand 2	p	100	101	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	p	354	358	first strand
Strand 2	p	384	396	anti-parallel
Strand 3	p	554	566	anti-parallel
Strand 4	p	469	478	anti-parallel
Strand 5	p	410	415	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	p	448	451	first strand
Strand 2	p	545	548	anti-parallel
Strand 3	p	501	504	anti-parallel
Strand 4	p	482	485	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	p	528	530	first strand
Strand 2	p	506	510	anti-parallel
Strand 3	p	541	543	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	p	516	518	first strand
Strand 2	p	521	523	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6X0M

Analysis of interatomic Contacts of Structural Units in PDB entry:
6X0M