Analysis of interatomic Contacts of Structural Units in PDB entry:
6X0T

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6X0T entry

There are 3 chains in PDB entry 6X0T (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 357	VAL 614
B	SER 358	VAL 614
C	SER 358	VAL 614

There are 18 helices in PDB entry 6X0T. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	410	415	Right-handed 310
Helix 2	AA2	A	419	422	Right-handed 310
Helix 3	AA3	A	528	533	Right-handed alpha
Helix 4	AA4	A	538	542	Right-handed 310
Helix 5	AA5	A	572	575	Right-handed 310
Helix 6	AA6	A	605	613	Right-handed alpha
Helix 7	AA7	B	410	415	Right-handed 310
Helix 8	AA8	B	419	422	Right-handed 310
Helix 9	AA9	B	528	533	Right-handed alpha
Helix 10	AB1	B	538	542	Right-handed 310
Helix 11	AB2	B	572	575	Right-handed 310
Helix 12	AB3	B	605	612	Right-handed alpha
Helix 13	AB4	C	410	415	Right-handed 310
Helix 14	AB5	C	419	422	Right-handed 310
Helix 15	AB6	C	528	533	Right-handed alpha
Helix 16	AB7	C	538	542	Right-handed 310
Helix 17	AB8	C	572	575	Right-handed 310
Helix 18	AB9	C	605	613	Right-handed alpha

There are 6 sheets in PDB entry 6X0T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	377	378	first strand
Strand 2	A	520	523	anti-parallel
Strand 3	A	500	504	anti-parallel
Strand 4	A	566	570	anti-parallel
Strand 5	A	578	586	anti-parallel
Strand 6	A	597	601	anti-parallel
Strand 7	A	546	549	anti-parallel
Strand 8	A	526	527	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	387	392	first strand
Strand 2	A	395	403	anti-parallel
Strand 3	A	406	409	anti-parallel
Strand 4	A	463	467	anti-parallel
Strand 5	A	440	449	anti-parallel
Strand 6	A	424	427	anti-parallel
Strand 7	A	387	392	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	377	378	first strand
Strand 2	B	520	523	anti-parallel
Strand 3	B	500	504	anti-parallel
Strand 4	B	566	570	anti-parallel
Strand 5	B	578	586	anti-parallel
Strand 6	B	597	601	anti-parallel
Strand 7	B	546	549	anti-parallel
Strand 8	B	526	527	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	387	392	first strand
Strand 2	B	395	403	anti-parallel
Strand 3	B	406	409	anti-parallel
Strand 4	B	463	467	anti-parallel
Strand 5	B	440	449	anti-parallel
Strand 6	B	424	427	anti-parallel
Strand 7	B	387	392	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	377	378	first strand
Strand 2	C	520	523	anti-parallel
Strand 3	C	500	504	anti-parallel
Strand 4	C	566	570	anti-parallel
Strand 5	C	578	586	anti-parallel
Strand 6	C	597	601	anti-parallel
Strand 7	C	546	549	anti-parallel
Strand 8	C	526	527	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	387	392	first strand
Strand 2	C	395	403	anti-parallel
Strand 3	C	406	409	anti-parallel
Strand 4	C	463	467	anti-parallel
Strand 5	C	440	449	anti-parallel
Strand 6	C	424	427	anti-parallel
Strand 7	C	387	392	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6X0T

Analysis of interatomic Contacts of Structural Units in PDB entry:
6X0T