Analysis of interatomic Contacts of Structural Units in PDB entry:
6X1J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6X1J entry

There are 3 chains in PDB entry 6X1J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 6VAL 231
C
 C 1 C 25
D
 DG 1 T 25
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 6X1J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 13Right-handed 310
Helix 2
AA2
A
19 27Right-handed alpha
Helix 3
AA3
A
33 46Right-handed alpha
Helix 4
AA4
A
67 78Right-handed alpha
Helix 5
AA5
A
79 82Right-handed 310
Helix 6
AA6
A
109 111Right-handed 310
Helix 7
AA7
A
112 119Right-handed alpha
Helix 8
AA8
A
130 135Right-handed alpha
Helix 9
AA9
A
137 148Right-handed alpha
Helix 10
AB1
A
171 187Right-handed alpha
Helix 11
AB2
A
204 206Right-handed 310
Helix 12
AB3
A
207 216Right-handed alpha
Helix 13
AB4
A
217 219Right-handed 310
Helix 14
AB5
A
220 227Right-handed 310
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There are 3 sheets in PDB entry 6X1J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 51first strand
Strand 2
A
60 65anti-parallel
Strand 3
A
98 105anti-parallel
Strand 4
A
87 92anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 121first strand
Strand 2
A
124 125anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 151first strand
Strand 2
A
163 165anti-parallel
Strand 3
A
198 203anti-parallel
Strand 4
A
191 195anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il