Analysis of interatomic Contacts of Structural Units in PDB entry:
6X1M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6X1M entry

There are 3 chains in PDB entry 6X1M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 754GLU 958
B
 HIS 753ASP 949
C
 LYS 746PRO 948
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 6X1M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
809 829Right-handed alpha
Helix 2
AA2
A
833 838Right-handed alpha
Helix 3
AA3
A
853 855Right-handed 310
Helix 4
AA4
A
856 870Right-handed alpha
Helix 5
AA5
A
894 905Right-handed alpha
Helix 6
AA6
A
916 922Right-handed alpha
Helix 7
AA7
A
924 929Right-handed alpha
Helix 8
AA8
A
939 947Right-handed alpha
Helix 9
AA9
A
948 952Right-handed 310
Helix 10
AB1
B
807 829Right-handed alpha
Helix 11
AB2
B
833 838Right-handed alpha
Helix 12
AB3
B
853 855Right-handed 310
Helix 13
AB4
B
856 870Right-handed alpha
Helix 14
AB5
B
894 904Right-handed alpha
Helix 15
AB6
B
916 922Right-handed alpha
Helix 16
AB7
B
939 947Right-handed alpha
Helix 17
AB8
C
807 829Right-handed alpha
Helix 18
AB9
C
833 838Right-handed alpha
Helix 19
AC1
C
849 855Right-handed 310
Helix 20
AC2
C
856 870Right-handed alpha
Helix 21
AC3
C
894 905Right-handed alpha
Helix 22
AC4
C
916 922Right-handed alpha
Helix 23
AC5
C
924 929Right-handed alpha
Helix 24
AC6
C
939 947Right-handed alpha
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There are 6 sheets in PDB entry 6X1M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
799 803first strand
Strand 2
A
839 843parallel
Strand 3
A
774 784anti-parallel
Strand 4
A
765 771anti-parallel
Strand 5
A
877 879parallel
Strand 6
A
909 913parallel
Strand 7
A
932 936parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
882 883first strand
Strand 2
A
889 890anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
799 803first strand
Strand 2
B
839 843parallel
Strand 3
B
774 786anti-parallel
Strand 4
B
765 771anti-parallel
Strand 5
B
877 879parallel
Strand 6
B
909 913parallel
Strand 7
B
932 936parallel
Strand 8
C
747 749parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
882 883first strand
Strand 2
B
889 890anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
840 843first strand
Strand 2
C
774 784anti-parallel
Strand 3
C
765 771anti-parallel
Strand 4
C
878 879parallel
Strand 5
C
909 913parallel
Strand 6
C
932 936parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
882 883first strand
Strand 2
C
889 890anti-parallel
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