Analysis of interatomic Contacts of Structural Units in PDB entry:
6X3J

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6X3J entry

There are 4 chains in PDB entry 6X3J (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 7	LYS 212
B	HIS 7	LYS 212
C	HIS 7	LEU 215
D	HIS 7	PRO 11

There are 58 helices in PDB entry 6X3J. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	27	30	Right-handed 310
Helix 2	AA2	A	51	53	Right-handed 310
Helix 3	AA3	A	83	86	Right-handed 310
Helix 4	AA4	A	95	100	Right-handed 310
Helix 5	AA5	A	102	106	Right-handed 310
Helix 6	AA6	A	174	185	Right-handed alpha
Helix 7	AA7	A	186	189	Right-handed 310
Helix 8	AA8	A	190	204	Right-handed alpha
Helix 9	AA9	A	205	211	Right-handed alpha
Helix 10	AB1	B	27	30	Right-handed 310
Helix 11	AB2	B	50	53	Right-handed 310
Helix 12	AB3	B	83	86	Right-handed 310
Helix 13	AB4	B	95	100	Right-handed 310
Helix 14	AB5	B	109	113	Right-handed 310
Helix 15	AB6	B	174	185	Right-handed alpha
Helix 16	AB7	B	186	189	Right-handed 310
Helix 17	AB8	B	190	204	Right-handed alpha
Helix 18	AB9	B	205	212	Right-handed alpha
Helix 19	AC1	C	27	30	Right-handed 310
Helix 20	AC2	C	51	53	Right-handed 310
Helix 21	AC3	C	83	86	Right-handed 310
Helix 22	AC4	C	95	100	Right-handed 310
Helix 23	AC5	C	103	107	Right-handed 310
Helix 24	AC6	C	109	113	Right-handed 310
Helix 25	AC7	C	174	185	Right-handed alpha
Helix 26	AC8	C	186	189	Right-handed 310
Helix 27	AC9	C	190	197	Right-handed alpha
Helix 28	AD1	C	197	204	Right-handed alpha
Helix 29	AD2	C	205	215	Right-handed alpha
Helix 30	AD3	D	26	30	Right-handed alpha
Helix 31	AD4	D	50	54	Right-handed alpha
Helix 32	AD5	D	83	86	Right-handed 310
Helix 33	AD6	D	95	100	Right-handed 310
Helix 34	AD7	D	103	107	Right-handed 310
Helix 35	AD8	D	109	113	Right-handed 310
Helix 36	AD9	D	174	185	Right-handed alpha
Helix 37	AE1	D	186	189	Right-handed 310
Helix 38	AE2	D	190	204	Right-handed alpha
Helix 39	AE3	D	205	213	Right-handed alpha
Helix 40	AE4	E	27	30	Right-handed 310
Helix 41	AE5	E	50	53	Right-handed 310
Helix 42	AE6	E	83	86	Right-handed 310
Helix 43	AE7	E	95	100	Right-handed 310
Helix 44	AE8	E	109	113	Right-handed 310
Helix 45	AE9	E	174	185	Right-handed alpha
Helix 46	AF1	E	186	189	Right-handed 310
Helix 47	AF2	E	190	197	Right-handed alpha
Helix 48	AF3	E	197	204	Right-handed alpha
Helix 49	AF4	E	205	212	Right-handed alpha
Helix 50	AF5	F	27	30	Right-handed 310
Helix 51	AF6	F	51	53	Right-handed 310
Helix 52	AF7	F	83	86	Right-handed 310
Helix 53	AF8	F	95	100	Right-handed 310
Helix 54	AF9	F	109	113	Right-handed 310
Helix 55	AG1	F	174	185	Right-handed alpha
Helix 56	AG2	F	186	189	Right-handed 310
Helix 57	AG3	F	190	203	Right-handed alpha
Helix 58	AG4	F	205	210	Right-handed alpha

There are 18 sheets in PDB entry 6X3J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	25	first strand
Strand 2	A	42	44	anti-parallel
Strand 3	A	73	74	parallel
Strand 4	A	126	127	parallel
Strand 5	A	144	145	parallel
Strand 6	A	159	162	parallel
Strand 7	A	167	171	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	37	first strand
Strand 2	A	66	68	parallel
Strand 3	A	119	121	parallel
Strand 4	A	138	139	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	55	56	first strand
Strand 2	A	79	81	parallel
Strand 3	A	132	133	parallel
Strand 4	A	150	151	parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	23	25	first strand
Strand 2	B	42	44	anti-parallel
Strand 3	B	73	74	parallel
Strand 4	B	126	127	parallel
Strand 5	B	144	145	parallel
Strand 6	B	159	162	parallel
Strand 7	B	167	171	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	37	first strand
Strand 2	B	66	68	parallel
Strand 3	B	119	121	parallel
Strand 4	B	138	139	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	55	56	first strand
Strand 2	B	79	81	parallel
Strand 3	B	132	133	parallel
Strand 4	B	150	151	parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	23	25	first strand
Strand 2	C	42	44	anti-parallel
Strand 3	C	73	74	parallel
Strand 4	C	126	127	parallel
Strand 5	C	144	145	parallel
Strand 6	C	159	162	parallel
Strand 7	C	167	171	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	35	37	first strand
Strand 2	C	66	68	parallel
Strand 3	C	119	121	parallel
Strand 4	C	138	139	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	55	56	first strand
Strand 2	C	79	81	parallel
Strand 3	C	132	133	parallel
Strand 4	C	150	151	parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	23	25	first strand
Strand 2	D	42	44	anti-parallel
Strand 3	D	73	74	parallel
Strand 4	D	126	127	parallel
Strand 5	D	144	145	parallel
Strand 6	D	159	162	parallel
Strand 7	D	167	171	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	35	37	first strand
Strand 2	D	66	68	parallel
Strand 3	D	119	121	parallel
Strand 4	D	138	139	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	55	56	first strand
Strand 2	D	79	81	parallel
Strand 3	D	132	133	parallel
Strand 4	D	150	151	parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	23	25	first strand
Strand 2	E	42	44	anti-parallel
Strand 3	E	73	74	parallel
Strand 4	E	126	127	parallel
Strand 5	E	144	145	parallel
Strand 6	E	159	162	parallel
Strand 7	E	167	171	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	35	37	first strand
Strand 2	E	66	68	parallel
Strand 3	E	119	121	parallel
Strand 4	E	138	139	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	55	56	first strand
Strand 2	E	79	81	parallel
Strand 3	E	132	133	parallel
Strand 4	E	150	151	parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	23	25	first strand
Strand 2	F	42	44	anti-parallel
Strand 3	F	73	74	parallel
Strand 4	F	126	127	parallel
Strand 5	F	144	145	parallel
Strand 6	F	159	162	parallel
Strand 7	F	167	171	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	35	37	first strand
Strand 2	F	66	68	parallel
Strand 3	F	119	121	parallel
Strand 4	F	138	139	parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	55	56	first strand
Strand 2	F	79	81	parallel
Strand 3	F	132	133	parallel
Strand 4	F	150	151	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6X3J

Analysis of interatomic Contacts of Structural Units in PDB entry:
6X3J