Analysis of interatomic Contacts of Structural Units in PDB entry:
6X3M

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6X3M entry

There are 4 chains in PDB entry 6X3M (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 7	LEU 367
B	PRO 6	LEU 367
C	PRO 6	LYS 366
D	LEU 7	GLU 263

There are 56 helices in PDB entry 6X3M. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	21	Right-handed alpha
Helix 2	AA2	A	48	52	Right-handed 310
Helix 3	AA3	A	102	117	Right-handed alpha
Helix 4	AA4	A	119	123	Right-handed 310
Helix 5	AA5	A	125	134	Right-handed alpha
Helix 6	AA6	A	356	363	Right-handed alpha
Helix 7	AA7	B	15	21	Right-handed alpha
Helix 8	AA8	B	48	52	Right-handed 310
Helix 9	AA9	B	87	91	Right-handed 310
Helix 10	AB1	B	102	117	Right-handed alpha
Helix 11	AB2	B	119	123	Right-handed 310
Helix 12	AB3	B	125	135	Right-handed alpha
Helix 13	AB4	B	356	362	Right-handed alpha
Helix 14	AB5	C	15	21	Right-handed alpha
Helix 15	AB6	C	48	52	Right-handed 310
Helix 16	AB7	C	102	117	Right-handed alpha
Helix 17	AB8	C	119	123	Right-handed 310
Helix 18	AB9	C	125	134	Right-handed alpha
Helix 19	AC1	C	358	363	Right-handed alpha
Helix 20	AC2	D	15	21	Right-handed alpha
Helix 21	AC3	D	48	52	Right-handed 310
Helix 22	AC4	D	102	117	Right-handed alpha
Helix 23	AC5	D	119	123	Right-handed 310
Helix 24	AC6	D	125	134	Right-handed alpha
Helix 25	AC7	E	15	21	Right-handed alpha
Helix 26	AC8	E	48	52	Right-handed 310
Helix 27	AC9	E	102	117	Right-handed alpha
Helix 28	AD1	E	119	123	Right-handed 310
Helix 29	AD2	E	125	135	Right-handed alpha
Helix 30	AD3	F	15	21	Right-handed alpha
Helix 31	AD4	F	48	52	Right-handed 310
Helix 32	AD5	F	87	91	Right-handed 310
Helix 33	AD6	F	102	117	Right-handed alpha
Helix 34	AD7	F	119	123	Right-handed 310
Helix 35	AD8	F	125	134	Right-handed alpha
Helix 36	AD9	F	353	358	Right-handed alpha
Helix 37	AE1	G	15	21	Right-handed alpha
Helix 38	AE2	G	48	52	Right-handed 310
Helix 39	AE3	G	87	91	Right-handed 310
Helix 40	AE4	G	102	117	Right-handed alpha
Helix 41	AE5	G	119	123	Right-handed 310
Helix 42	AE6	G	125	134	Right-handed alpha
Helix 43	AE7	G	356	366	Right-handed alpha
Helix 44	AE8	H	15	21	Right-handed alpha
Helix 45	AE9	H	48	52	Right-handed 310
Helix 46	AF1	H	87	91	Right-handed 310
Helix 47	AF2	H	102	117	Right-handed alpha
Helix 48	AF3	H	119	123	Right-handed 310
Helix 49	AF4	H	125	134	Right-handed alpha
Helix 50	AF5	H	356	369	Right-handed alpha
Helix 51	AF6	I	15	21	Right-handed alpha
Helix 52	AF7	I	48	52	Right-handed 310
Helix 53	AF8	I	102	117	Right-handed alpha
Helix 54	AF9	I	119	123	Right-handed 310
Helix 55	AG1	I	125	135	Right-handed alpha
Helix 56	AG2	I	362	366	Right-handed 310

There are 26 sheets in PDB entry 6X3M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	14	first strand
Strand 2	A	32	34	parallel
Strand 3	A	40	41	anti-parallel

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There are 15 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	142	144	first strand
Strand 2	C	148	150	parallel
Strand 3	B	167	170	parallel
Strand 4	A	179	183	parallel
Strand 5	C	193	197	parallel
Strand 6	B	207	211	parallel
Strand 7	A	218	222	parallel
Strand 8	C	234	237	parallel
Strand 9	B	246	250	parallel
Strand 10	A	256	263	parallel
Strand 11	C	276	283	parallel
Strand 12	B	295	300	parallel
Strand 13	A	310	314	parallel
Strand 14	A	317	322	anti-parallel
Strand 15	A	328	329	anti-parallel

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There are 15 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	141	144	first strand
Strand 2	A	147	150	parallel
Strand 3	C	167	170	parallel
Strand 4	B	179	183	parallel
Strand 5	A	193	197	parallel
Strand 6	C	207	211	parallel
Strand 7	B	218	222	parallel
Strand 8	A	234	238	parallel
Strand 9	C	246	250	parallel
Strand 10	B	258	263	parallel
Strand 11	A	276	283	parallel
Strand 12	C	295	299	parallel
Strand 13	B	310	314	parallel
Strand 14	B	317	322	anti-parallel
Strand 15	B	328	329	anti-parallel

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There are 15 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	142	144	first strand
Strand 2	B	148	150	parallel
Strand 3	A	167	170	parallel
Strand 4	C	179	183	parallel
Strand 5	B	193	197	parallel
Strand 6	A	207	211	parallel
Strand 7	C	218	222	parallel
Strand 8	B	234	238	parallel
Strand 9	A	246	250	parallel
Strand 10	C	256	263	parallel
Strand 11	B	276	283	parallel
Strand 12	A	295	299	parallel
Strand 13	C	310	314	parallel
Strand 14	C	317	322	anti-parallel
Strand 15	C	328	329	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	334	335	first strand
Strand 2	C	340	341	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	340	341	first strand
Strand 2	B	334	335	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	14	first strand
Strand 2	B	32	34	parallel
Strand 3	B	40	41	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	340	341	first strand
Strand 2	C	334	335	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	14	first strand
Strand 2	C	32	34	parallel
Strand 3	C	40	41	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	12	14	first strand
Strand 2	D	32	34	parallel
Strand 3	D	40	41	anti-parallel

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There are 15 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	141	144	first strand
Strand 2	F	147	150	parallel
Strand 3	E	167	170	parallel
Strand 4	D	179	183	parallel
Strand 5	F	193	197	parallel
Strand 6	E	207	211	parallel
Strand 7	D	218	222	parallel
Strand 8	F	234	238	parallel
Strand 9	E	246	250	parallel
Strand 10	D	256	263	parallel
Strand 11	F	276	283	parallel
Strand 12	E	295	299	parallel
Strand 13	D	310	314	parallel
Strand 14	D	317	322	anti-parallel
Strand 15	D	328	329	anti-parallel

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There are 15 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	142	144	first strand
Strand 2	D	148	150	parallel
Strand 3	F	167	170	parallel
Strand 4	E	179	183	parallel
Strand 5	D	193	197	parallel
Strand 6	F	207	211	parallel
Strand 7	E	218	222	parallel
Strand 8	D	234	237	parallel
Strand 9	F	246	250	parallel
Strand 10	E	256	263	parallel
Strand 11	D	276	283	parallel
Strand 12	F	295	299	parallel
Strand 13	E	310	314	parallel
Strand 14	E	317	322	anti-parallel
Strand 15	E	328	329	anti-parallel

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There are 15 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	142	144	first strand
Strand 2	E	148	150	parallel
Strand 3	D	167	170	parallel
Strand 4	F	179	183	parallel
Strand 5	E	193	197	parallel
Strand 6	D	207	211	parallel
Strand 7	F	218	222	parallel
Strand 8	E	234	237	parallel
Strand 9	D	246	250	parallel
Strand 10	F	256	263	parallel
Strand 11	E	276	283	parallel
Strand 12	D	295	299	parallel
Strand 13	F	310	314	parallel
Strand 14	F	317	322	anti-parallel
Strand 15	F	328	329	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	340	341	first strand
Strand 2	E	334	335	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	12	14	first strand
Strand 2	E	32	34	parallel
Strand 3	E	40	41	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	340	341	first strand
Strand 2	F	334	335	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	12	14	first strand
Strand 2	F	32	34	parallel
Strand 3	F	40	41	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	12	14	first strand
Strand 2	G	32	34	parallel
Strand 3	G	40	41	anti-parallel

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There are 15 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	142	144	first strand
Strand 2	I	148	150	parallel
Strand 3	H	167	170	parallel
Strand 4	G	179	183	parallel
Strand 5	I	193	197	parallel
Strand 6	H	207	211	parallel
Strand 7	G	218	222	parallel
Strand 8	I	234	237	parallel
Strand 9	H	246	250	parallel
Strand 10	G	256	262	parallel
Strand 11	I	276	282	parallel
Strand 12	H	295	299	parallel
Strand 13	G	310	314	parallel
Strand 14	G	317	322	anti-parallel
Strand 15	G	328	329	anti-parallel

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There are 17 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	142	144	first strand
Strand 2	G	148	150	parallel
Strand 3	I	167	170	parallel
Strand 4	H	179	183	parallel
Strand 5	G	193	197	parallel
Strand 6	I	207	211	parallel
Strand 7	H	218	222	parallel
Strand 8	G	234	238	parallel
Strand 9	I	246	250	parallel
Strand 10	H	256	262	parallel
Strand 11	G	276	282	parallel
Strand 12	I	295	299	parallel
Strand 13	H	310	314	parallel
Strand 14	H	317	322	anti-parallel
Strand 15	H	328	330	anti-parallel
Strand 16	G	334	336	parallel
Strand 17	I	340	341	parallel

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	141	144	first strand
Strand 2	H	147	150	parallel
Strand 3	G	167	170	parallel
Strand 4	I	179	183	parallel
Strand 5	H	193	197	parallel
Strand 6	G	207	211	parallel
Strand 7	I	218	222	parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	246	250	first strand
Strand 2	I	256	263	parallel
Strand 3	H	276	283	parallel
Strand 4	G	295	299	parallel
Strand 5	I	310	314	parallel
Strand 6	I	317	322	anti-parallel
Strand 7	I	328	329	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	340	341	first strand
Strand 2	H	334	335	parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	12	14	first strand
Strand 2	H	32	34	parallel
Strand 3	H	39	41	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	340	341	first strand
Strand 2	I	334	335	parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	12	14	first strand
Strand 2	I	32	34	parallel
Strand 3	I	40	41	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6X3M

Analysis of interatomic Contacts of Structural Units in PDB entry:
6X3M