Analysis of interatomic Contacts of Structural Units in PDB entry:
6X3O


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6X3O entry

There are 2 chains in PDB entry 6X3O (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TRP 395SER 659
B
 GLY 393SER 659
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 6X3O. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
398 400Right-handed 310
Helix 2
AA2
A
438 450Right-handed alpha
Helix 3
AA3
A
481 488Right-handed alpha
Helix 4
AA4
A
489 492Right-handed 310
Helix 5
AA5
A
494 515Right-handed alpha
Helix 6
AA6
A
523 525Right-handed 310
Helix 7
AA7
A
541 546Right-handed 310
Helix 8
AA8
A
548 553Right-handed alpha
Helix 9
AA9
A
560 564Right-handed 310
Helix 10
AB1
A
565 572Right-handed alpha
Helix 11
AB2
A
575 592Right-handed alpha
Helix 12
AB3
A
602 612Right-handed alpha
Helix 13
AB4
A
623 633Right-handed alpha
Helix 14
AB5
A
637 641Right-handed 310
Helix 15
AB6
A
643 659Right-handed alpha
Helix 16
AB7
B
398 400Right-handed 310
Helix 17
AB8
B
438 450Right-handed alpha
Helix 18
AB9
B
481 488Right-handed alpha
Helix 19
AC1
B
489 492Right-handed 310
Helix 20
AC2
B
494 515Right-handed alpha
Helix 21
AC3
B
523 525Right-handed 310
Helix 22
AC4
B
541 546Right-handed 310
Helix 23
AC5
B
548 553Right-handed alpha
Helix 24
AC6
B
560 564Right-handed 310
Helix 25
AC7
B
565 572Right-handed alpha
Helix 26
AC8
B
575 592Right-handed alpha
Helix 27
AC9
B
602 612Right-handed alpha
Helix 28
AD1
B
623 633Right-handed alpha
Helix 29
AD2
B
637 641Right-handed 310
Helix 30
AD3
B
643 659Right-handed alpha
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There are 4 sheets in PDB entry 6X3O. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
402 411first strand
Strand 2
A
414 421anti-parallel
Strand 3
A
425 432anti-parallel
Strand 4
A
471 474anti-parallel
Strand 5
A
460 464anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
527 529first strand
Strand 2
A
535 537anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
402 411first strand
Strand 2
B
414 421anti-parallel
Strand 3
B
425 432anti-parallel
Strand 4
B
471 474anti-parallel
Strand 5
B
460 464anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
527 529first strand
Strand 2
B
535 537anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il