Analysis of interatomic Contacts of Structural Units in PDB entry:
6X41


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6X41 entry

There are 2 chains in PDB entry 6X41 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 4PRO 420
B
 THR 4PRO 420
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 6X41. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 36Right-handed alpha
Helix 2
AA2
A
39 52Right-handed alpha
Helix 3
AA3
A
52 63Right-handed alpha
Helix 4
AA4
A
64 66Right-handed 310
Helix 5
AA5
A
67 74Right-handed alpha
Helix 6
AA6
A
76 90Right-handed alpha
Helix 7
AA7
A
103 108Right-handed 310
Helix 8
AA8
A
122 134Right-handed alpha
Helix 9
AA9
A
223 236Right-handed alpha
Helix 10
AB1
A
237 242Right-handed alpha
Helix 11
AB2
A
243 255Right-handed alpha
Helix 12
AB3
A
257 267Right-handed alpha
Helix 13
AB4
A
268 273Right-handed alpha
Helix 14
AB5
A
275 292Right-handed alpha
Helix 15
AB6
A
305 310Right-handed 310
Helix 16
AB7
A
315 319Right-handed 310
Helix 17
AB8
A
322 334Right-handed alpha
Helix 18
AB9
A
353 357Right-handed 310
Helix 19
AC1
A
377 379Right-handed 310
Helix 20
AC2
B
19 36Right-handed alpha
Helix 21
AC3
B
39 52Right-handed alpha
Helix 22
AC4
B
52 63Right-handed alpha
Helix 23
AC5
B
64 66Right-handed 310
Helix 24
AC6
B
67 74Right-handed alpha
Helix 25
AC7
B
76 89Right-handed alpha
Helix 26
AC8
B
103 108Right-handed 310
Helix 27
AC9
B
122 134Right-handed alpha
Helix 28
AD1
B
223 236Right-handed alpha
Helix 29
AD2
B
238 242Right-handed 310
Helix 30
AD3
B
243 255Right-handed alpha
Helix 31
AD4
B
258 267Right-handed alpha
Helix 32
AD5
B
268 272Right-handed 310
Helix 33
AD6
B
275 290Right-handed alpha
Helix 34
AD7
B
305 310Right-handed 310
Helix 35
AD8
B
315 319Right-handed 310
Helix 36
AD9
B
322 334Right-handed alpha
Helix 37
AE1
B
377 379Right-handed 310
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There are 8 sheets in PDB entry 6X41. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 102first strand
Strand 2
A
161 167anti-parallel
Strand 3
A
205 215parallel
Strand 4
A
182 202anti-parallel
Strand 5
A
137 146anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 102first strand
Strand 2
A
161 167anti-parallel
Strand 3
A
205 215parallel
Strand 4
A
182 202anti-parallel
Strand 5
A
174 177anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
298 304first strand
Strand 2
A
361 367anti-parallel
Strand 3
A
409 419parallel
Strand 4
A
394 406anti-parallel
Strand 5
A
337 340anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
344 347first strand
Strand 2
A
387 390anti-parallel
Strand 3
A
374 375anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 102first strand
Strand 2
B
161 167anti-parallel
Strand 3
B
205 215parallel
Strand 4
B
182 202anti-parallel
Strand 5
B
137 146anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 102first strand
Strand 2
B
161 167anti-parallel
Strand 3
B
205 215parallel
Strand 4
B
182 202anti-parallel
Strand 5
B
174 177anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
298 304first strand
Strand 2
B
361 367anti-parallel
Strand 3
B
409 418parallel
Strand 4
B
394 406anti-parallel
Strand 5
B
337 340anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
344 347first strand
Strand 2
B
387 390anti-parallel
Strand 3
B
374 375anti-parallel
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