Analysis of interatomic Contacts of Structural Units in PDB entry:
6X58

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6X58 entry

There are 6 chains in PDB entry 6X58 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	GLU 1	SER 233
D	SER 2	THR 212
E	LEU -11	ALA 126
F	LEU -11	ALA 126
A	GLU 1	PRO 231
B	SER 2	ALA 210

There are 27 helices in PDB entry 6X58. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	28	32	Right-handed 310
Helix 2	AA2	C	89	93	Right-handed 310
Helix 3	AA3	C	172	176	Right-handed 310
Helix 4	AA4	C	218	222	Right-handed 310
Helix 5	AA5	D	25	30	Right-handed alpha
Helix 6	AA6	D	78	82	Right-handed 310
Helix 7	AA7	D	124	130	Right-handed alpha
Helix 8	AA8	D	184	190	Right-handed alpha
Helix 9	AA9	E	-9	27	Right-handed alpha
Helix 10	AB1	E	35	58	Right-handed alpha
Helix 11	AB2	E	62	71	Right-handed alpha
Helix 12	AB3	E	72	77	Right-handed alpha
Helix 13	AB4	E	80	92	Right-handed alpha
Helix 14	AB5	E	97	125	Right-handed alpha
Helix 15	AB6	F	-9	27	Right-handed alpha
Helix 16	AB7	F	35	58	Right-handed alpha
Helix 17	AB8	F	62	71	Right-handed alpha
Helix 18	AB9	F	72	77	Right-handed alpha
Helix 19	AC1	F	80	92	Right-handed alpha
Helix 20	AC2	F	97	125	Right-handed alpha
Helix 21	AC3	A	89	93	Right-handed 310
Helix 22	AC4	A	172	176	Right-handed 310
Helix 23	AC5	A	218	222	Right-handed 310
Helix 24	AC6	B	25	30	Right-handed alpha
Helix 25	AC7	B	78	82	Right-handed 310
Helix 26	AC8	B	124	130	Right-handed alpha
Helix 27	AC9	B	184	190	Right-handed alpha

There are 24 sheets in PDB entry 6X58. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	7	first strand
Strand 2	C	17	25	anti-parallel
Strand 3	C	80	86	anti-parallel
Strand 4	C	70	75	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	12	first strand
Strand 2	C	126	129	parallel
Strand 3	C	94	104	anti-parallel
Strand 4	C	33	39	anti-parallel
Strand 5	C	46	51	anti-parallel
Strand 6	C	60	62	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	12	first strand
Strand 2	C	126	129	parallel
Strand 3	C	94	104	anti-parallel
Strand 4	C	115	121	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	138	142	first strand
Strand 2	C	153	163	anti-parallel
Strand 3	C	194	203	anti-parallel
Strand 4	C	181	183	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	149	150	first strand
Strand 2	C	153	163	anti-parallel
Strand 3	C	194	203	anti-parallel
Strand 4	C	187	188	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	212	215	first strand
Strand 2	C	226	229	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	6	first strand
Strand 2	D	17	23	anti-parallel
Strand 3	D	69	75	anti-parallel
Strand 4	D	61	66	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	13	first strand
Strand 2	D	104	109	parallel
Strand 3	D	84	90	anti-parallel
Strand 4	D	33	37	anti-parallel
Strand 5	D	44	48	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	9	13	first strand
Strand 2	D	104	109	parallel
Strand 3	D	84	90	anti-parallel
Strand 4	D	98	100	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	117	121	first strand
Strand 2	D	134	142	anti-parallel
Strand 3	D	175	182	anti-parallel
Strand 4	D	162	164	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	117	121	first strand
Strand 2	D	134	142	anti-parallel
Strand 3	D	175	182	anti-parallel
Strand 4	D	168	169	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	148	153	first strand
Strand 2	D	194	200	anti-parallel
Strand 3	D	203	209	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	7	first strand
Strand 2	A	17	25	anti-parallel
Strand 3	A	80	86	anti-parallel
Strand 4	A	70	75	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	12	first strand
Strand 2	A	126	129	parallel
Strand 3	A	94	104	anti-parallel
Strand 4	A	33	39	anti-parallel
Strand 5	A	46	51	anti-parallel
Strand 6	A	60	62	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	12	first strand
Strand 2	A	126	129	parallel
Strand 3	A	94	104	anti-parallel
Strand 4	A	115	121	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	138	142	first strand
Strand 2	A	153	163	anti-parallel
Strand 3	A	194	203	anti-parallel
Strand 4	A	181	183	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	149	150	first strand
Strand 2	A	153	163	anti-parallel
Strand 3	A	194	203	anti-parallel
Strand 4	A	187	188	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	212	215	first strand
Strand 2	A	226	229	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	6	first strand
Strand 2	B	17	23	anti-parallel
Strand 3	B	69	75	anti-parallel
Strand 4	B	61	66	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	13	first strand
Strand 2	B	104	109	parallel
Strand 3	B	84	90	anti-parallel
Strand 4	B	33	37	anti-parallel
Strand 5	B	44	48	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	13	first strand
Strand 2	B	104	109	parallel
Strand 3	B	84	90	anti-parallel
Strand 4	B	98	100	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	117	121	first strand
Strand 2	B	134	142	anti-parallel
Strand 3	B	175	182	anti-parallel
Strand 4	B	162	164	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	117	121	first strand
Strand 2	B	134	142	anti-parallel
Strand 3	B	175	182	anti-parallel
Strand 4	B	168	169	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	148	153	first strand
Strand 2	B	194	200	anti-parallel
Strand 3	B	203	209	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6X58

Analysis of interatomic Contacts of Structural Units in PDB entry:
6X58