Analysis of interatomic Contacts of Structural Units in PDB entry:
6X5C

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6X5C entry

There are 9 chains in PDB entry 6X5C (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 33	ARG 504
B	ALA 512	LEU 660
C	LYS 1	LEU 96
D	LYS 33	ARG 504
F	ALA 517	LEU 660
I	LYS 1	LEU 96
E	LYS 33	ARG 504
G	ALA 512	GLU 659
J	LYS 1	LEU 96

There are 49 helices in PDB entry 6X5C. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	65	68	Right-handed 310
Helix 2	AA2	A	69	74	Right-handed alpha
Helix 3	AA3	A	99	114	Right-handed alpha
Helix 4	AA4	A	334	353	Right-handed alpha
Helix 5	AA5	A	368	373	Right-handed alpha
Helix 6	AA6	A	474	484	Right-handed alpha
Helix 7	AA7	B	517	522	Right-handed alpha
Helix 8	AA8	B	529	546	Right-handed alpha
Helix 9	AA9	B	561	565	Right-handed 310
Helix 10	AB1	B	566	593	Right-handed alpha
Helix 11	AB2	B	594	597	Right-handed 310
Helix 12	AB3	B	618	625	Right-handed alpha
Helix 13	AB4	B	627	635	Right-handed alpha
Helix 14	AB5	B	638	659	Right-handed alpha
Helix 15	AB6	C	58	64	Right-handed 310
Helix 16	AB7	C	75	79	Right-handed 310
Helix 17	AB8	D	65	68	Right-handed 310
Helix 18	AB9	D	69	74	Right-handed alpha
Helix 19	AC1	D	99	114	Right-handed alpha
Helix 20	AC2	D	334	353	Right-handed alpha
Helix 21	AC3	D	368	373	Right-handed alpha
Helix 22	AC4	D	475	483	Right-handed alpha
Helix 23	AC5	F	519	524	Right-handed alpha
Helix 24	AC6	F	529	546	Right-handed alpha
Helix 25	AC7	F	561	565	Right-handed 310
Helix 26	AC8	F	566	593	Right-handed alpha
Helix 27	AC9	F	594	597	Right-handed 310
Helix 28	AD1	F	611	615	Right-handed 310
Helix 29	AD2	F	618	626	Right-handed alpha
Helix 30	AD3	F	627	635	Right-handed alpha
Helix 31	AD4	F	638	659	Right-handed alpha
Helix 32	AD5	I	58	64	Right-handed 310
Helix 33	AD6	I	75	79	Right-handed 310
Helix 34	AD7	E	64	72	Right-handed alpha
Helix 35	AD8	E	99	114	Right-handed alpha
Helix 36	AD9	E	334	350	Right-handed alpha
Helix 37	AE1	E	368	373	Right-handed alpha
Helix 38	AE2	E	387	391	Right-handed 310
Helix 39	AE3	E	479	484	Right-handed alpha
Helix 40	AE4	G	520	526	Right-handed alpha
Helix 41	AE5	G	529	546	Right-handed alpha
Helix 42	AE6	G	561	565	Right-handed 310
Helix 43	AE7	G	567	593	Right-handed alpha
Helix 44	AE8	G	594	597	Right-handed 310
Helix 45	AE9	G	618	625	Right-handed alpha
Helix 46	AF1	G	627	635	Right-handed alpha
Helix 47	AF2	G	638	658	Right-handed alpha
Helix 48	AF3	J	58	64	Right-handed 310
Helix 49	AF4	J	75	79	Right-handed 310

There are 28 sheets in PDB entry 6X5C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	494	500	first strand
Strand 2	A	34	40	anti-parallel
Strand 3	B	603	609	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	47	first strand
Strand 2	A	486	491	anti-parallel
Strand 3	A	224	228	anti-parallel
Strand 4	A	242	245	anti-parallel
Strand 5	A	84	85	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	55	first strand
Strand 2	A	216	218	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	91	94	first strand
Strand 2	A	236	239	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	199	202	first strand
Strand 2	A	120	123	anti-parallel
Strand 3	A	432	434	anti-parallel
Strand 4	A	423	425	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	259	261	first strand
Strand 2	A	443	455	anti-parallel
Strand 3	A	284	298	anti-parallel
Strand 4	A	328	333	anti-parallel
Strand 5	A	414	421	anti-parallel
Strand 6	A	381	385	anti-parallel
Strand 7	A	374	378	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	271	273	first strand
Strand 2	A	284	298	anti-parallel
Strand 3	A	443	455	anti-parallel
Strand 4	A	469	470	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	2	5	first strand
Strand 2	C	92	96	parallel
Strand 3	C	81	86	anti-parallel
Strand 4	C	26	30	anti-parallel
Strand 5	C	35	40	anti-parallel
Strand 6	C	43	46	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	12	17	first strand
Strand 2	C	66	71	anti-parallel
Strand 3	C	55	56	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	494	499	first strand
Strand 2	D	35	40	anti-parallel
Strand 3	F	603	609	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	45	47	first strand
Strand 2	D	486	491	anti-parallel
Strand 3	D	223	228	anti-parallel
Strand 4	D	242	245	anti-parallel
Strand 5	D	84	85	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	53	56	first strand
Strand 2	D	215	218	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	91	92	first strand
Strand 2	D	238	239	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	199	202	first strand
Strand 2	D	120	123	anti-parallel
Strand 3	D	432	434	anti-parallel
Strand 4	D	423	425	anti-parallel

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There are 7 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	259	261	first strand
Strand 2	D	447	455	anti-parallel
Strand 3	D	284	298	anti-parallel
Strand 4	D	328	333	anti-parallel
Strand 5	D	414	420	anti-parallel
Strand 6	D	381	386	anti-parallel
Strand 7	D	374	378	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	271	273	first strand
Strand 2	D	284	298	anti-parallel
Strand 3	D	447	455	anti-parallel
Strand 4	D	469	470	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	259	261	first strand
Strand 2	D	447	455	anti-parallel
Strand 3	D	284	298	anti-parallel
Strand 4	D	443	444	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	2	5	first strand
Strand 2	I	92	96	parallel
Strand 3	I	81	86	anti-parallel
Strand 4	I	26	30	anti-parallel
Strand 5	I	35	40	anti-parallel
Strand 6	I	43	46	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	14	17	first strand
Strand 2	I	66	71	anti-parallel
Strand 3	I	55	56	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	494	499	first strand
Strand 2	E	35	40	anti-parallel
Strand 3	G	603	609	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	45	47	first strand
Strand 2	E	486	491	anti-parallel
Strand 3	E	225	228	anti-parallel
Strand 4	E	242	245	anti-parallel
Strand 5	E	84	85	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	53	56	first strand
Strand 2	E	215	218	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	91	94	first strand
Strand 2	E	236	239	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	199	202	first strand
Strand 2	E	120	123	anti-parallel
Strand 3	E	432	434	anti-parallel
Strand 4	E	423	425	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	260	261	first strand
Strand 2	E	443	454	anti-parallel
Strand 3	E	284	298	anti-parallel
Strand 4	E	271	273	anti-parallel

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There are 7 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	260	261	first strand
Strand 2	E	443	454	anti-parallel
Strand 3	E	284	298	anti-parallel
Strand 4	E	328	333	anti-parallel
Strand 5	E	414	420	anti-parallel
Strand 6	E	381	386	anti-parallel
Strand 7	E	374	378	anti-parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	2	5	first strand
Strand 2	J	92	96	parallel
Strand 3	J	81	86	anti-parallel
Strand 4	J	26	30	anti-parallel
Strand 5	J	35	40	anti-parallel
Strand 6	J	43	46	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	12	17	first strand
Strand 2	J	66	71	anti-parallel
Strand 3	J	55	56	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6X5C

Analysis of interatomic Contacts of Structural Units in PDB entry:
6X5C