Analysis of interatomic Contacts of Structural Units in PDB entry:
6X5H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6X5H entry

There are 3 chains in PDB entry 6X5H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
LEU 108GLU 574
B
LEU 108GLU 574
C
LEU 108LYS 402
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 66 helices in PDB entry 6X5H. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
109 138Right-handed alpha
Helix 2
AA2
A
141 173Right-handed alpha
Helix 3
AA3
A
175 200Right-handed alpha
Helix 4
AA4
A
203 207Right-handed 310
Helix 5
AA5
A
219 238Right-handed alpha
Helix 6
AA6
A
254 258Right-handed 310
Helix 7
AA7
A
293 297Right-handed 310
Helix 8
AA8
A
310 320Right-handed alpha
Helix 9
AA9
A
322 336Right-handed alpha
Helix 10
AB1
A
339 354Right-handed alpha
Helix 11
AB2
A
366 370Right-handed 310
Helix 12
AB3
A
378 397Right-handed alpha
Helix 13
AB4
A
412 421Right-handed alpha
Helix 14
AB5
A
429 436Right-handed alpha
Helix 15
AB6
A
437 441Right-handed 310
Helix 16
AB7
A
443 460Right-handed alpha
Helix 17
AB8
A
469 481Right-handed alpha
Helix 18
AB9
A
570 574Right-handed 310
Helix 19
AC1
B
109 138Right-handed alpha
Helix 20
AC2
B
141 173Right-handed alpha
Helix 21
AC3
B
175 200Right-handed alpha
Helix 22
AC4
B
203 207Right-handed 310
Helix 23
AC5
B
219 238Right-handed alpha
Helix 24
AC6
B
254 258Right-handed 310
Helix 25
AC7
B
293 297Right-handed 310
Helix 26
AC8
B
310 320Right-handed alpha
Helix 27
AC9
B
322 336Right-handed alpha
Helix 28
AD1
B
339 354Right-handed alpha
Helix 29
AD2
B
366 370Right-handed 310
Helix 30
AD3
B
378 397Right-handed alpha
Helix 31
AD4
B
412 421Right-handed alpha
Helix 32
AD5
B
429 436Right-handed alpha
Helix 33
AD6
B
437 441Right-handed 310
Helix 34
AD7
B
443 459Right-handed alpha
Helix 35
AD8
B
469 481Right-handed alpha
Helix 36
AD9
B
570 574Right-handed 310
Helix 37
AE1
C
109 138Right-handed alpha
Helix 38
AE2
C
141 173Right-handed alpha
Helix 39
AE3
C
175 200Right-handed alpha
Helix 40
AE4
C
203 207Right-handed 310
Helix 41
AE5
C
219 238Right-handed alpha
Helix 42
AE6
C
254 258Right-handed 310
Helix 43
AE7
C
293 297Right-handed 310
Helix 44
AE8
C
310 320Right-handed alpha
Helix 45
AE9
C
322 336Right-handed alpha
Helix 46
AF1
C
339 354Right-handed alpha
Helix 47
AF2
C
378 395Right-handed alpha
Helix 48
AF3
C
412 421Right-handed alpha
Helix 49
AF4
C
445 460Right-handed alpha
Helix 50
AF5
C
469 481Right-handed alpha
Helix 51
AF6
C
570 574Right-handed 310
Helix 52
AF7
D
109 138Right-handed alpha
Helix 53
AF8
D
141 173Right-handed alpha
Helix 54
AF9
D
175 200Right-handed alpha
Helix 55
AG1
D
203 207Right-handed 310
Helix 56
AG2
D
219 238Right-handed alpha
Helix 57
AG3
D
254 258Right-handed 310
Helix 58
AG4
D
293 297Right-handed 310
Helix 59
AG5
D
310 320Right-handed alpha
Helix 60
AG6
D
322 336Right-handed alpha
Helix 61
AG7
D
339 354Right-handed alpha
Helix 62
AG8
D
378 395Right-handed alpha
Helix 63
AG9
D
412 421Right-handed alpha
Helix 64
AH1
D
446 459Right-handed alpha
Helix 65
AH2
D
469 480Right-handed alpha
Helix 66
AH3
D
570 574Right-handed 310
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There are 16 sheets in PDB entry 6X5H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
240 244first strand
Strand 2
A
209 213parallel
Strand 3
A
288 290parallel
Strand 4
A
274 276parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
308 309first strand
Strand 2
A
564 565parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
424 427first strand
Strand 2
A
402 408parallel
Strand 3
A
359 364parallel
Strand 4
A
462 465parallel
Strand 5
A
490 492parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
549 554first strand
Strand 2
A
539 544anti-parallel
Strand 3
A
528 534anti-parallel
Strand 4
A
506 509anti-parallel
Strand 5
A
558 560anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
240 244first strand
Strand 2
B
209 213parallel
Strand 3
B
288 290parallel
Strand 4
B
274 276parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
308 309first strand
Strand 2
B
564 565parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
424 427first strand
Strand 2
B
402 408parallel
Strand 3
B
359 364parallel
Strand 4
B
462 465parallel
Strand 5
B
490 492parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
549 554first strand
Strand 2
B
539 544anti-parallel
Strand 3
B
528 534anti-parallel
Strand 4
B
506 509anti-parallel
Strand 5
B
558 560anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
240 244first strand
Strand 2
C
209 213parallel
Strand 3
C
288 290parallel
Strand 4
C
274 276parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
308 309first strand
Strand 2
C
564 565parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
424 427first strand
Strand 2
C
402 408parallel
Strand 3
C
359 364parallel
Strand 4
C
462 465parallel
Strand 5
C
490 492parallel
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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
550 554first strand
Strand 2
C
539 544anti-parallel
Strand 3
C
528 534anti-parallel
Strand 4
C
506 509anti-parallel
Strand 5
C
558 560anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
240 244first strand
Strand 2
D
209 213parallel
Strand 3
D
288 290parallel
Strand 4
D
274 276parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
308 309first strand
Strand 2
D
564 565parallel
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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
424 427first strand
Strand 2
D
402 408parallel
Strand 3
D
359 364parallel
Strand 4
D
462 465parallel
Strand 5
D
490 492parallel
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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
D
549 554first strand
Strand 2
D
539 544anti-parallel
Strand 3
D
528 534anti-parallel
Strand 4
D
506 509anti-parallel
Strand 5
D
558 560anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il