Analysis of interatomic Contacts of Structural Units in PDB entry:
6X5P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6X5P entry

There are 2 chains in PDB entry 6X5P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 16LEU 249
B
 VAL 86GLN 139
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 6X5P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
54 58Right-handed 310
Helix 2
AA2
A
127 137Right-handed alpha
Helix 3
AA3
A
167 174Right-handed alpha
Helix 4
AA4
A
239 248Right-handed alpha
Helix 5
AA5
B
90 95Right-handed 310
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There are 4 sheets in PDB entry 6X5P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 21first strand
Strand 2
A
159 166anti-parallel
Strand 3
A
183 186anti-parallel
Strand 4
A
231 235anti-parallel
Strand 5
A
211 220anti-parallel
Strand 6
A
203 208anti-parallel
Strand 7
A
139 144anti-parallel
Strand 8
A
159 166anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 34first strand
Strand 2
A
41 47anti-parallel
Strand 3
A
50 53anti-parallel
Strand 4
A
106 110anti-parallel
Strand 5
A
81 90anti-parallel
Strand 6
A
65 68anti-parallel
Strand 7
A
30 34anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
98 100first strand
Strand 2
B
108 110anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
115 117first strand
Strand 2
B
124 126anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il