Analysis of interatomic Contacts of Structural Units in PDB entry:
6X6V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6X6V entry

There are 3 chains in PDB entry 6X6V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	THR 5	PRO 420
B	THR 5	PRO 420
C	THR 5	LEU 412

There are 74 helices in PDB entry 6X6V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	19	38	Right-handed alpha
Helix 2	AA2	A	39	63	Right-handed alpha
Helix 3	AA3	A	64	66	Right-handed 310
Helix 4	AA4	A	67	74	Right-handed alpha
Helix 5	AA5	A	76	90	Right-handed alpha
Helix 6	AA6	A	103	108	Right-handed 310
Helix 7	AA7	A	122	134	Right-handed alpha
Helix 8	AA8	A	223	236	Right-handed alpha
Helix 9	AA9	A	237	242	Right-handed 310
Helix 10	AB1	A	243	255	Right-handed alpha
Helix 11	AB2	A	257	267	Right-handed alpha
Helix 12	AB3	A	268	273	Right-handed alpha
Helix 13	AB4	A	275	292	Right-handed alpha
Helix 14	AB5	A	305	310	Right-handed 310
Helix 15	AB6	A	315	319	Right-handed 310
Helix 16	AB7	A	322	334	Right-handed alpha
Helix 17	AB8	A	353	357	Right-handed 310
Helix 18	AB9	A	377	379	Right-handed 310
Helix 19	AC1	B	19	38	Right-handed alpha
Helix 20	AC2	B	39	63	Right-handed alpha
Helix 21	AC3	B	64	66	Right-handed 310
Helix 22	AC4	B	67	74	Right-handed alpha
Helix 23	AC5	B	76	90	Right-handed alpha
Helix 24	AC6	B	103	108	Right-handed 310
Helix 25	AC7	B	122	134	Right-handed alpha
Helix 26	AC8	B	223	236	Right-handed alpha
Helix 27	AC9	B	237	242	Right-handed 310
Helix 28	AD1	B	243	255	Right-handed alpha
Helix 29	AD2	B	257	267	Right-handed alpha
Helix 30	AD3	B	268	273	Right-handed alpha
Helix 31	AD4	B	275	292	Right-handed alpha
Helix 32	AD5	B	305	310	Right-handed 310
Helix 33	AD6	B	315	319	Right-handed 310
Helix 34	AD7	B	322	334	Right-handed alpha
Helix 35	AD8	B	353	357	Right-handed 310
Helix 36	AD9	B	377	379	Right-handed 310
Helix 37	AE1	C	19	38	Right-handed alpha
Helix 38	AE2	C	39	51	Right-handed alpha
Helix 39	AE3	C	52	63	Right-handed alpha
Helix 40	AE4	C	64	66	Right-handed 310
Helix 41	AE5	C	67	74	Right-handed alpha
Helix 42	AE6	C	76	90	Right-handed alpha
Helix 43	AE7	C	103	108	Right-handed 310
Helix 44	AE8	C	122	134	Right-handed alpha
Helix 45	AE9	C	223	236	Right-handed alpha
Helix 46	AF1	C	238	242	Right-handed 310
Helix 47	AF2	C	243	255	Right-handed alpha
Helix 48	AF3	C	257	267	Right-handed alpha
Helix 49	AF4	C	268	273	Right-handed alpha
Helix 50	AF5	C	275	292	Right-handed alpha
Helix 51	AF6	C	305	310	Right-handed 310
Helix 52	AF7	C	315	319	Right-handed 310
Helix 53	AF8	C	322	334	Right-handed alpha
Helix 54	AF9	C	353	357	Right-handed 310
Helix 55	AG1	C	377	379	Right-handed 310
Helix 56	AG2	D	19	38	Right-handed alpha
Helix 57	AG3	D	39	52	Right-handed alpha
Helix 58	AG4	D	52	63	Right-handed alpha
Helix 59	AG5	D	64	66	Right-handed 310
Helix 60	AG6	D	67	74	Right-handed alpha
Helix 61	AG7	D	76	89	Right-handed alpha
Helix 62	AG8	D	103	108	Right-handed 310
Helix 63	AG9	D	122	134	Right-handed alpha
Helix 64	AH1	D	223	236	Right-handed alpha
Helix 65	AH2	D	237	242	Right-handed 310
Helix 66	AH3	D	243	255	Right-handed alpha
Helix 67	AH4	D	257	267	Right-handed alpha
Helix 68	AH5	D	268	273	Right-handed alpha
Helix 69	AH6	D	275	292	Right-handed alpha
Helix 70	AH7	D	305	310	Right-handed 310
Helix 71	AH8	D	315	319	Right-handed 310
Helix 72	AH9	D	322	334	Right-handed alpha
Helix 73	AI1	D	353	357	Right-handed 310
Helix 74	AI2	D	377	379	Right-handed 310

There are 16 sheets in PDB entry 6X6V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	102	first strand
Strand 2	A	161	167	anti-parallel
Strand 3	A	206	215	parallel
Strand 4	A	181	201	anti-parallel
Strand 5	A	138	146	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	102	first strand
Strand 2	A	161	167	anti-parallel
Strand 3	A	206	215	parallel
Strand 4	A	181	201	anti-parallel
Strand 5	A	174	178	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	298	304	first strand
Strand 2	A	361	367	anti-parallel
Strand 3	A	409	419	parallel
Strand 4	A	394	406	anti-parallel
Strand 5	A	337	340	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	344	347	first strand
Strand 2	A	387	390	anti-parallel
Strand 3	A	373	375	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	102	first strand
Strand 2	B	161	167	anti-parallel
Strand 3	B	205	215	parallel
Strand 4	B	182	202	anti-parallel
Strand 5	B	138	146	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	96	102	first strand
Strand 2	B	161	167	anti-parallel
Strand 3	B	205	215	parallel
Strand 4	B	182	202	anti-parallel
Strand 5	B	174	177	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	298	304	first strand
Strand 2	B	361	367	anti-parallel
Strand 3	B	409	419	parallel
Strand 4	B	394	406	anti-parallel
Strand 5	B	337	340	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	344	347	first strand
Strand 2	B	387	390	anti-parallel
Strand 3	B	373	375	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	96	102	first strand
Strand 2	C	161	167	anti-parallel
Strand 3	C	206	215	parallel
Strand 4	C	182	201	anti-parallel
Strand 5	C	138	146	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	96	102	first strand
Strand 2	C	161	167	anti-parallel
Strand 3	C	206	215	parallel
Strand 4	C	182	201	anti-parallel
Strand 5	C	174	177	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	298	304	first strand
Strand 2	C	361	367	anti-parallel
Strand 3	C	409	419	parallel
Strand 4	C	394	406	anti-parallel
Strand 5	C	337	340	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	344	347	first strand
Strand 2	C	387	390	anti-parallel
Strand 3	C	373	375	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	96	102	first strand
Strand 2	D	161	167	anti-parallel
Strand 3	D	206	215	parallel
Strand 4	D	181	201	anti-parallel
Strand 5	D	138	146	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	96	102	first strand
Strand 2	D	161	167	anti-parallel
Strand 3	D	206	215	parallel
Strand 4	D	181	201	anti-parallel
Strand 5	D	174	178	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	298	304	first strand
Strand 2	D	361	367	anti-parallel
Strand 3	D	409	419	parallel
Strand 4	D	394	406	anti-parallel
Strand 5	D	337	340	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	344	347	first strand
Strand 2	D	387	390	anti-parallel
Strand 3	D	373	375	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6X6V

Analysis of interatomic Contacts of Structural Units in PDB entry:
6X6V