Analysis of interatomic Contacts of Structural Units in PDB entry:
6X88


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6X88 entry

There are 2 chains in PDB entry 6X88 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 48GLN 453
B
 ARG 55GLN 453
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 25 helices in PDB entry 6X88. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
49 70Right-handed alpha
Helix 2
AA2
A
75 90Right-handed alpha
Helix 3
AA3
A
122 127Right-handed alpha
Helix 4
AA4
A
129 133Right-handed 310
Helix 5
AA5
A
141 150Right-handed alpha
Helix 6
AA6
A
157 161Right-handed 310
Helix 7
AA7
A
166 172Right-handed alpha
Helix 8
AA8
A
206 251Right-handed alpha
Helix 9
AA9
A
256 268Right-handed alpha
Helix 10
AB1
A
268 273Right-handed alpha
Helix 11
AB2
A
341 346Right-handed alpha
Helix 12
AB3
A
347 355Right-handed alpha
Helix 13
AB4
A
415 447Right-handed alpha
Helix 14
AB5
B
60 71Right-handed alpha
Helix 15
AB6
B
75 90Right-handed alpha
Helix 16
AB7
B
122 127Right-handed alpha
Helix 17
AB8
B
141 150Right-handed alpha
Helix 18
AB9
B
157 161Right-handed 310
Helix 19
AC1
B
165 173Right-handed alpha
Helix 20
AC2
B
208 253Right-handed alpha
Helix 21
AC3
B
256 268Right-handed alpha
Helix 22
AC4
B
269 272Right-handed 310
Helix 23
AC5
B
343 346Right-handed 310
Helix 24
AC6
B
347 355Right-handed alpha
Helix 25
AC7
B
415 451Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 6X88. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 136first strand
Strand 2
A
107 117anti-parallel
Strand 3
A
93 104anti-parallel
Strand 4
A
189 199anti-parallel
Strand 5
A
179 186anti-parallel
Strand 6
A
153 155anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
317 324first strand
Strand 2
A
274 282anti-parallel
Strand 3
A
399 408anti-parallel
Strand 4
A
387 393anti-parallel
Strand 5
A
359 360anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
135 137first strand
Strand 2
B
109 117anti-parallel
Strand 3
B
93 102anti-parallel
Strand 4
B
189 199anti-parallel
Strand 5
B
179 186anti-parallel
Strand 6
B
153 155anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
333 335first strand
Strand 2
B
319 324anti-parallel
Strand 3
B
274 279anti-parallel
Strand 4
B
399 408anti-parallel
Strand 5
B
387 393anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il