Analysis of interatomic Contacts of Structural Units in PDB entry:
6X8F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6X8F entry

There are 4 chains in PDB entry 6X8F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 889GLU 1053
A
 TYR 1055GLY 1178
C
 PRO 889GLU 1053
C
 TYR 1055GLY 1178
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 26 helices in PDB entry 6X8F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
937 953Right-handed alpha
Helix 2
AA2
A
985 990Right-handed alpha
Helix 3
AA3
A
996 1017Right-handed alpha
Helix 4
AA4
A
1025 1027Right-handed 310
Helix 5
AA5
A
1064 1068Right-handed 310
Helix 6
AA6
A
1069 1075Right-handed alpha
Helix 7
AA7
A
1080 1096Right-handed alpha
Helix 8
AA8
A
1099 1102Right-handed 310
Helix 9
AA9
A
1103 1113Right-handed alpha
Helix 10
AB1
A
1119 1130Right-handed alpha
Helix 11
AB2
A
1141 1152Right-handed alpha
Helix 12
AB3
A
1155 1159Right-handed 310
Helix 13
AB4
A
1161 1177Right-handed alpha
Helix 14
AB5
C
937 953Right-handed alpha
Helix 15
AB6
C
986 990Right-handed alpha
Helix 16
AB7
C
996 1017Right-handed alpha
Helix 17
AB8
C
1025 1027Right-handed 310
Helix 18
AB9
C
1064 1068Right-handed 310
Helix 19
AC1
C
1069 1075Right-handed alpha
Helix 20
AC2
C
1080 1096Right-handed alpha
Helix 21
AC3
C
1099 1102Right-handed 310
Helix 22
AC4
C
1103 1113Right-handed alpha
Helix 23
AC5
C
1119 1130Right-handed alpha
Helix 24
AC6
C
1141 1152Right-handed alpha
Helix 25
AC7
C
1155 1159Right-handed 310
Helix 26
AC8
C
1161 1177Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 6X8F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
897 905first strand
Strand 2
A
909 916anti-parallel
Strand 3
A
925 932anti-parallel
Strand 4
A
976 979anti-parallel
Strand 5
A
962 965anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1019 1020first strand
Strand 2
A
1046 1047anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1029 1033first strand
Strand 2
A
1036 1039anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1054 1056first strand
Strand 2
A
1077 1079anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
891 892first strand
Strand 2
C
962 967parallel
Strand 3
C
974 979anti-parallel
Strand 4
C
925 931anti-parallel
Strand 5
C
910 916anti-parallel
Strand 6
C
897 905anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
984 985first strand
Strand 2
C
1029 1033anti-parallel
Strand 3
C
1036 1039anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1019 1020first strand
Strand 2
C
1046 1047anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1054 1056first strand
Strand 2
C
1077 1079anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il