Analysis of interatomic Contacts of Structural Units in PDB entry:
6X8K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6X8K entry

There are 8 chains in PDB entry 6X8K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 35THR 174
B
 ASP 34GLU 173
C
 ILE 187TYR 276
D
 HIS 185TYR 276
E
 ASP 402VAL 404
E
 ALA 406ALA 408
F
 ASP 502VAL 504
F
 ALA 506ALA 508
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 6X8K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
56 60Right-handed 310
Helix 2
AA2
A
66 81Right-handed alpha
Helix 3
AA3
A
92 106Right-handed alpha
Helix 4
AA4
A
136 141Right-handed alpha
Helix 5
AA5
A
142 144Right-handed 310
Helix 6
AA6
A
148 152Right-handed 310
Helix 7
AA7
B
56 60Right-handed 310
Helix 8
AA8
B
66 81Right-handed alpha
Helix 9
AA9
B
92 106Right-handed alpha
Helix 10
AB1
B
136 142Right-handed alpha
Helix 11
AB2
B
148 152Right-handed 310
Helix 12
AB3
C
214 227Right-handed alpha
Helix 13
AB4
C
231 247Right-handed alpha
Helix 14
AB5
C
253 257Right-handed 310
Helix 15
AB6
D
214 227Right-handed alpha
Helix 16
AB7
D
231 247Right-handed alpha
Helix 17
AB8
D
253 257Right-handed 310
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There are 8 sheets in PDB entry 6X8K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 89first strand
Strand 2
A
43 51parallel
Strand 3
A
111 119parallel
Strand 4
A
156 161parallel
Strand 5
C
193 197parallel
Strand 6
C
264 267anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 123first strand
Strand 2
A
126 129anti-parallel
Strand 3
A
132 135anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
165 167first strand
Strand 2
C
202 203parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
84 89first strand
Strand 2
B
43 51parallel
Strand 3
B
111 119parallel
Strand 4
B
156 161parallel
Strand 5
D
193 197parallel
Strand 6
D
264 267anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
122 123first strand
Strand 2
B
126 129anti-parallel
Strand 3
B
132 135anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
165 167first strand
Strand 2
D
202 203parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
212 213first strand
Strand 2
C
206 208anti-parallel
Strand 3
E
403 404anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
212 213first strand
Strand 2
D
206 208anti-parallel
Strand 3
F
503 504anti-parallel
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