Analysis of interatomic Contacts of Structural Units in PDB entry:
6X8T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6X8T entry

There is 1 chain in PDB entry 6X8T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 8TYR 305
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 7 helices in PDB entry 6X8T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 17Right-handed alpha
Helix 2
AA2
A
34 40Right-handed alpha
Helix 3
AA3
A
100 106Right-handed alpha
Helix 4
AA4
A
111 135Right-handed alpha
Helix 5
AA5
A
158 169Right-handed alpha
Helix 6
AA6
A
179 193Right-handed alpha
Helix 7
AA7
A
285 287Right-handed 310
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There are 4 sheets in PDB entry 6X8T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 44first strand
Strand 2
A
242 246parallel
Strand 3
A
270 283anti-parallel
Strand 4
A
90 99anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 44first strand
Strand 2
A
242 246parallel
Strand 3
A
270 283anti-parallel
Strand 4
A
258 265anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 52first strand
Strand 2
A
85 88anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 151first strand
Strand 2
A
289 295parallel
Strand 3
A
228 233anti-parallel
Strand 4
A
175 178anti-parallel
Strand 5
A
213 217parallel
Strand 6
A
205 210anti-parallel
Strand 7
A
199 202anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il