Analysis of interatomic Contacts of Structural Units in PDB entry:
6X96

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6X96 entry

There are 12 chains in PDB entry 6X96 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TRP 35	ARG 503
B	LEU 520	LEU 660
H	LEU 4	VAL 111
L	ASP 1	GLU 103
C	TRP 35	ARG 503
D	LEU 520	LEU 660
E	LEU 4	VAL 111
F	ASP 1	GLU 103
G	TRP 35	ARG 503
I	LEU 520	LEU 660
J	LEU 4	VAL 111
K	ASP 1	GLU 103

There are 60 helices in PDB entry 6X96. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	70	74	Right-handed 310
Helix 2	AA2	A	98	116	Right-handed alpha
Helix 3	AA3	A	122	126	Right-handed 310
Helix 4	AA4	A	139	151	Right-handed 310
Helix 5	AA5	A	335	350	Right-handed alpha
Helix 6	AA6	A	351	353	Right-handed 310
Helix 7	AA7	A	368	373	Right-handed alpha
Helix 8	AA8	A	387	390	Right-handed 310
Helix 9	AA9	A	478	484	Right-handed 310
Helix 10	AB1	B	531	535	Right-handed 310
Helix 11	AB2	B	536	542	Right-handed alpha
Helix 12	AB3	B	569	596	Right-handed alpha
Helix 13	AB4	B	611	615	Right-handed 310
Helix 14	AB5	B	618	625	Right-handed alpha
Helix 15	AB6	B	627	635	Right-handed alpha
Helix 16	AB7	B	638	652	Right-handed alpha
Helix 17	AB8	B	653	660	Right-handed 310
Helix 18	AB9	H	53	55	Right-handed 310
Helix 19	AC1	H	61	64	Right-handed 310
Helix 20	AC2	H	83	87	Right-handed 310
Helix 21	AC3	C	70	74	Right-handed 310
Helix 22	AC4	C	98	116	Right-handed alpha
Helix 23	AC5	C	122	126	Right-handed 310
Helix 24	AC6	C	139	151	Right-handed 310
Helix 25	AC7	C	335	350	Right-handed alpha
Helix 26	AC8	C	351	353	Right-handed 310
Helix 27	AC9	C	368	373	Right-handed alpha
Helix 28	AD1	C	387	390	Right-handed 310
Helix 29	AD2	C	478	484	Right-handed 310
Helix 30	AD3	D	531	535	Right-handed 310
Helix 31	AD4	D	536	542	Right-handed alpha
Helix 32	AD5	D	569	596	Right-handed alpha
Helix 33	AD6	D	611	615	Right-handed 310
Helix 34	AD7	D	618	625	Right-handed alpha
Helix 35	AD8	D	627	635	Right-handed alpha
Helix 36	AD9	D	638	652	Right-handed alpha
Helix 37	AE1	D	653	660	Right-handed 310
Helix 38	AE2	E	53	55	Right-handed 310
Helix 39	AE3	E	61	64	Right-handed 310
Helix 40	AE4	E	83	87	Right-handed 310
Helix 41	AE5	G	70	74	Right-handed 310
Helix 42	AE6	G	98	116	Right-handed alpha
Helix 43	AE7	G	122	126	Right-handed 310
Helix 44	AE8	G	139	151	Right-handed 310
Helix 45	AE9	G	335	350	Right-handed alpha
Helix 46	AF1	G	351	353	Right-handed 310
Helix 47	AF2	G	368	373	Right-handed alpha
Helix 48	AF3	G	387	390	Right-handed 310
Helix 49	AF4	G	478	484	Right-handed 310
Helix 50	AF5	I	531	535	Right-handed 310
Helix 51	AF6	I	536	542	Right-handed alpha
Helix 52	AF7	I	569	596	Right-handed alpha
Helix 53	AF8	I	611	615	Right-handed 310
Helix 54	AF9	I	618	625	Right-handed alpha
Helix 55	AG1	I	627	635	Right-handed alpha
Helix 56	AG2	I	638	652	Right-handed alpha
Helix 57	AG3	I	653	660	Right-handed 310
Helix 58	AG4	J	53	55	Right-handed 310
Helix 59	AG5	J	61	64	Right-handed 310
Helix 60	AG6	J	83	87	Right-handed 310

There are 42 sheets in PDB entry 6X96. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	494	498	first strand
Strand 2	A	36	40	anti-parallel
Strand 3	B	603	605	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	45	47	first strand
Strand 2	A	486	491	anti-parallel
Strand 3	A	223	228	anti-parallel
Strand 4	A	242	245	anti-parallel
Strand 5	A	84	85	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	55	first strand
Strand 2	A	215	218	anti-parallel
Strand 3	A	247	251	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	94	first strand
Strand 2	A	236	238	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	177	first strand
Strand 2	A	154	162	anti-parallel
Strand 3	A	129	133	anti-parallel
Strand 4	A	189	193	anti-parallel
Strand 5	A	181	183	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	201	203	first strand
Strand 2	A	433	435	parallel
Strand 3	A	423	424	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	259	261	first strand
Strand 2	A	444	456	anti-parallel
Strand 3	A	284	297	anti-parallel
Strand 4	A	330	334	anti-parallel
Strand 5	A	413	421	anti-parallel
Strand 6	A	381	385	anti-parallel
Strand 7	A	374	378	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	271	274	first strand
Strand 2	A	284	297	anti-parallel
Strand 3	A	444	456	anti-parallel
Strand 4	A	465	469	anti-parallel
Strand 5	A	358	360	parallel
Strand 6	A	394	395	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	301	312	first strand
Strand 2	A	315	323	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	5	7	first strand
Strand 2	H	18	23	anti-parallel
Strand 3	H	76	81	anti-parallel
Strand 4	H	67	71	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	11	first strand
Strand 2	H	107	110	parallel
Strand 3	H	88	95	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	46	52	anti-parallel
Strand 6	H	56	59	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	11	first strand
Strand 2	H	107	110	parallel
Strand 3	H	88	95	anti-parallel
Strand 4	H	102	103	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	6	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	67	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	53	54	first strand
Strand 2	L	45	49	anti-parallel
Strand 3	L	33	38	anti-parallel
Strand 4	L	85	90	anti-parallel
Strand 5	L	98	102	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	494	498	first strand
Strand 2	C	36	40	anti-parallel
Strand 3	D	603	605	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	45	47	first strand
Strand 2	C	486	491	anti-parallel
Strand 3	C	223	228	anti-parallel
Strand 4	C	242	245	anti-parallel
Strand 5	C	84	85	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	53	55	first strand
Strand 2	C	215	218	anti-parallel
Strand 3	C	247	251	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	92	94	first strand
Strand 2	C	236	238	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	177	first strand
Strand 2	C	154	162	anti-parallel
Strand 3	C	129	133	anti-parallel
Strand 4	C	189	193	anti-parallel
Strand 5	C	181	183	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	201	203	first strand
Strand 2	C	433	435	parallel
Strand 3	C	423	424	anti-parallel

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	259	261	first strand
Strand 2	C	444	456	anti-parallel
Strand 3	C	284	297	anti-parallel
Strand 4	C	330	334	anti-parallel
Strand 5	C	413	421	anti-parallel
Strand 6	C	381	385	anti-parallel
Strand 7	C	374	378	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	271	274	first strand
Strand 2	C	284	297	anti-parallel
Strand 3	C	444	456	anti-parallel
Strand 4	C	465	469	anti-parallel
Strand 5	C	358	360	parallel
Strand 6	C	394	395	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	301	312	first strand
Strand 2	C	315	323	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	5	7	first strand
Strand 2	E	18	23	anti-parallel
Strand 3	E	76	81	anti-parallel
Strand 4	E	67	71	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	11	first strand
Strand 2	E	107	110	parallel
Strand 3	E	88	95	anti-parallel
Strand 4	E	34	39	anti-parallel
Strand 5	E	46	52	anti-parallel
Strand 6	E	56	59	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	11	first strand
Strand 2	E	107	110	parallel
Strand 3	E	88	95	anti-parallel
Strand 4	E	102	103	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	6	first strand
Strand 2	F	19	25	anti-parallel
Strand 3	F	70	75	anti-parallel
Strand 4	F	62	67	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	53	54	first strand
Strand 2	F	45	49	anti-parallel
Strand 3	F	33	38	anti-parallel
Strand 4	F	85	90	anti-parallel
Strand 5	F	98	102	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	494	498	first strand
Strand 2	G	36	40	anti-parallel
Strand 3	I	603	605	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	45	47	first strand
Strand 2	G	486	491	anti-parallel
Strand 3	G	223	228	anti-parallel
Strand 4	G	242	245	anti-parallel
Strand 5	G	84	85	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	53	55	first strand
Strand 2	G	215	218	anti-parallel
Strand 3	G	247	251	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	92	94	first strand
Strand 2	G	236	238	anti-parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	169	177	first strand
Strand 2	G	154	162	anti-parallel
Strand 3	G	129	133	anti-parallel
Strand 4	G	189	193	anti-parallel
Strand 5	G	181	183	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	201	203	first strand
Strand 2	G	433	435	parallel
Strand 3	G	423	424	anti-parallel

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There are 7 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	259	261	first strand
Strand 2	G	444	456	anti-parallel
Strand 3	G	284	297	anti-parallel
Strand 4	G	330	334	anti-parallel
Strand 5	G	413	421	anti-parallel
Strand 6	G	381	385	anti-parallel
Strand 7	G	374	378	anti-parallel

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There are 6 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	271	274	first strand
Strand 2	G	284	297	anti-parallel
Strand 3	G	444	456	anti-parallel
Strand 4	G	465	469	anti-parallel
Strand 5	G	358	360	parallel
Strand 6	G	394	395	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	301	312	first strand
Strand 2	G	315	323	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	5	7	first strand
Strand 2	J	18	23	anti-parallel
Strand 3	J	76	81	anti-parallel
Strand 4	J	67	71	anti-parallel

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There are 6 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	11	first strand
Strand 2	J	107	110	parallel
Strand 3	J	88	95	anti-parallel
Strand 4	J	34	39	anti-parallel
Strand 5	J	46	52	anti-parallel
Strand 6	J	56	59	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	11	first strand
Strand 2	J	107	110	parallel
Strand 3	J	88	95	anti-parallel
Strand 4	J	102	103	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	4	6	first strand
Strand 2	K	19	25	anti-parallel
Strand 3	K	70	75	anti-parallel
Strand 4	K	62	67	anti-parallel

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There are 5 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	53	54	first strand
Strand 2	K	45	49	anti-parallel
Strand 3	K	33	38	anti-parallel
Strand 4	K	85	90	anti-parallel
Strand 5	K	98	102	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6X96

Analysis of interatomic Contacts of Structural Units in PDB entry:
6X96