Analysis of interatomic Contacts of Structural Units in PDB entry:
6XAD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6XAD entry

There is 1 chain in PDB entry 6XAD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 53ILE 306
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 6XAD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
71 83Right-handed alpha
Helix 2
AA2
A
93 103Right-handed alpha
Helix 3
AA3
A
112 122Right-handed alpha
Helix 4
AA4
A
153 157Right-handed 310
Helix 5
AA5
A
172 181Right-handed alpha
Helix 6
AA6
A
185 190Right-handed alpha
Helix 7
AA7
A
198 208Right-handed alpha
Helix 8
AA8
A
218 228Right-handed alpha
Helix 9
AA9
A
228 233Right-handed alpha
Helix 10
AB1
A
256 269Right-handed alpha
Helix 11
AB2
A
270 272Right-handed 310
Helix 12
AB3
A
273 284Right-handed alpha
Helix 13
AB4
A
292 295Right-handed 310
Helix 14
AB5
A
296 304Right-handed alpha
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There are 3 sheets in PDB entry 6XAD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 91first strand
Strand 2
A
54 59parallel
Strand 3
A
108 110parallel
Strand 4
A
249 251anti-parallel
Strand 5
A
125 131anti-parallel
Strand 6
A
287 289anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
137 138first strand
Strand 2
A
244 245anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 162first strand
Strand 2
A
213 217parallel
Strand 3
A
140 145anti-parallel
Strand 4
A
235 240anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il