Analysis of interatomic Contacts of Structural Units in PDB entry:
6XB5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6XB5 entry

There are 2 chains in PDB entry 6XB5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 240
B
 MET 1LEU 240
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 6XB5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
41 43Right-handed 310
Helix 2
AA2
A
44 52Right-handed alpha
Helix 3
AA3
A
180 190Right-handed alpha
Helix 4
AA4
B
41 43Right-handed 310
Helix 5
AA5
B
44 52Right-handed alpha
Helix 6
AA6
B
180 190Right-handed alpha
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There are 10 sheets in PDB entry 6XB5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 16first strand
Strand 2
A
82 87anti-parallel
Strand 3
A
73 77anti-parallel
Strand 4
A
123 125anti-parallel
Strand 5
A
131 139anti-parallel
Strand 6
A
142 145anti-parallel
Strand 7
A
103 113anti-parallel
Strand 8
A
238 239first strand
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 99first strand
Strand 2
A
103 113anti-parallel
Strand 3
A
142 145anti-parallel
Strand 4
A
131 139anti-parallel
Strand 5
A
152 156first strand
Strand 6
B
223 228anti-parallel
Strand 7
B
213 217anti-parallel
Strand 8
B
203 207anti-parallel
Strand 9
B
162 164parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 26first strand
Strand 2
A
29 33anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 39first strand
Strand 2
A
61 62anti-parallel
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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
162 164first strand
Strand 2
A
203 207parallel
Strand 3
A
213 217anti-parallel
Strand 4
A
223 228anti-parallel
Strand 5
B
152 156anti-parallel
Strand 6
B
103 113anti-parallel
Strand 7
B
142 145anti-parallel
Strand 8
B
131 139anti-parallel
Strand 9
B
89 99first strand
Strand 10
B
232 233parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
14 16first strand
Strand 2
B
82 87anti-parallel
Strand 3
B
73 77anti-parallel
Strand 4
B
123 125anti-parallel
Strand 5
B
131 139anti-parallel
Strand 6
B
142 145anti-parallel
Strand 7
B
103 113anti-parallel
Strand 8
B
238 239first strand
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
171 173first strand
Strand 2
A
176 178anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 26first strand
Strand 2
B
29 33anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 39first strand
Strand 2
B
61 62anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
171 173first strand
Strand 2
B
176 178anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il