Analysis of interatomic Contacts of Structural Units in PDB entry:
6XB8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6XB8 entry

There are 6 chains in PDB entry 6XB8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 205
B
 MET 1GLN 200
C
 MET 1ASN 206
D
 MET 1VAL 196
E
 G 5 T 10
F
 C 6 T 9
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 33 helices in PDB entry 6XB8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 19Right-handed alpha
Helix 2
AA2
A
23 32Right-handed alpha
Helix 3
AA3
A
44 48Right-handed 310
Helix 4
AA4
A
49 72Right-handed alpha
Helix 5
AA5
A
101 120Right-handed alpha
Helix 6
AA6
A
151 157Right-handed alpha
Helix 7
AA7
A
172 176Right-handed 310
Helix 8
AA8
A
181 203Right-handed alpha
Helix 9
AA9
B
14 19Right-handed alpha
Helix 10
AB1
B
23 32Right-handed alpha
Helix 11
AB2
B
44 48Right-handed 310
Helix 12
AB3
B
49 72Right-handed alpha
Helix 13
AB4
B
101 120Right-handed alpha
Helix 14
AB5
B
151 157Right-handed alpha
Helix 15
AB6
B
172 176Right-handed 310
Helix 16
AB7
B
181 199Right-handed alpha
Helix 17
AB8
C
14 19Right-handed alpha
Helix 18
AB9
C
23 32Right-handed alpha
Helix 19
AC1
C
44 48Right-handed 310
Helix 20
AC2
C
49 72Right-handed alpha
Helix 21
AC3
C
101 120Right-handed alpha
Helix 22
AC4
C
151 157Right-handed alpha
Helix 23
AC5
C
172 176Right-handed 310
Helix 24
AC6
C
181 202Right-handed alpha
Helix 25
AC7
C
203 205Right-handed 310
Helix 26
AC8
D
14 19Right-handed alpha
Helix 27
AC9
D
23 32Right-handed alpha
Helix 28
AD1
D
44 48Right-handed 310
Helix 29
AD2
D
49 72Right-handed alpha
Helix 30
AD3
D
101 121Right-handed alpha
Helix 31
AD4
D
151 157Right-handed alpha
Helix 32
AD5
D
172 176Right-handed 310
Helix 33
AD6
D
181 195Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 6XB8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 134first strand
Strand 2
A
4 11anti-parallel
Strand 3
A
89 96anti-parallel
Strand 4
A
78 84anti-parallel
Strand 5
A
165 170anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
132 134first strand
Strand 2
B
4 11anti-parallel
Strand 3
B
147 148anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
132 134first strand
Strand 2
B
4 11anti-parallel
Strand 3
B
89 96anti-parallel
Strand 4
B
78 84anti-parallel
Strand 5
B
165 170anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
132 134first strand
Strand 2
C
4 11anti-parallel
Strand 3
C
89 96anti-parallel
Strand 4
C
78 84anti-parallel
Strand 5
C
165 170anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
132 134first strand
Strand 2
D
4 11anti-parallel
Strand 3
D
147 148anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
132 134first strand
Strand 2
D
4 11anti-parallel
Strand 3
D
89 96anti-parallel
Strand 4
D
78 84anti-parallel
Strand 5
D
165 170anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il