Analysis of interatomic Contacts of Structural Units in PDB entry:
6XBU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6XBU entry

There are 3 chains in PDB entry 6XBU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 1823ASP 2587
F
 T 6 G 13
E
 C 4 A 10
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 26 helices in PDB entry 6XBU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1831 1833Right-handed 310
Helix 2
AA2
A
1834 1845Right-handed alpha
Helix 3
AA3
A
1943 1952Right-handed alpha
Helix 4
AA4
A
1966 1974Right-handed alpha
Helix 5
AA5
A
1988 1997Right-handed alpha
Helix 6
AA6
A
2004 2012Right-handed alpha
Helix 7
AA7
A
2016 2021Right-handed 310
Helix 8
AA8
A
2041 2067Right-handed alpha
Helix 9
AA9
A
2068 2076Right-handed alpha
Helix 10
AB1
A
2076 2091Right-handed alpha
Helix 11
AB2
A
2096 2109Right-handed alpha
Helix 12
AB3
A
2196 2206Right-handed alpha
Helix 13
AB4
A
2248 2252Right-handed 310
Helix 14
AB5
A
2313 2317Right-handed 310
Helix 15
AB6
A
2333 2343Right-handed alpha
Helix 16
AB7
A
2345 2354Right-handed alpha
Helix 17
AB8
A
2359 2366Right-handed alpha
Helix 18
AB9
A
2378 2392Right-handed alpha
Helix 19
AC1
A
2394 2403Right-handed alpha
Helix 20
AC2
A
2405 2418Right-handed alpha
Helix 21
AC3
A
2421 2438Right-handed alpha
Helix 22
AC4
A
2451 2455Right-handed 310
Helix 23
AC5
A
2457 2475Right-handed alpha
Helix 24
AC6
A
2475 2493Right-handed alpha
Helix 25
AC7
A
2502 2507Right-handed alpha
Helix 26
AC8
A
2550 2563Right-handed alpha
Back to top of page

There are 7 sheets in PDB entry 6XBU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1826 1829first strand
Strand 2
A
1911 1914parallel
Strand 3
A
1905 1906anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1849 1851first strand
Strand 2
A
1961 1963parallel
Strand 3
A
1985 1986parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1855 1858first strand
Strand 2
A
1898 1902anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2092 2093first strand
Strand 2
A
2227 2229anti-parallel
Strand 3
A
2219 2220anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2256 2257first strand
Strand 2
A
2311 2312anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2532 2538first strand
Strand 2
A
2541 2547anti-parallel
Strand 3
A
2324 2330anti-parallel
Strand 4
A
2575 2579anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2439 2441first strand
Strand 2
A
2447 2449anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il