Analysis of interatomic Contacts of Structural Units in PDB entry:
6XCP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6XCP entry

There are 4 chains in PDB entry 6XCP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 0PRO 180
C
 GLY -2SER 219
D
 MET 2PRO 217
E
 GLY 3ASP 254
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 6XCP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
45 50Right-handed alpha
Helix 2
AA2
A
56 77Right-handed alpha
Helix 3
AA3
C
81 91Right-handed alpha
Helix 4
AA4
C
91 105Right-handed alpha
Helix 5
AA5
C
105 116Right-handed alpha
Helix 6
AA6
C
117 120Right-handed 310
Helix 7
AA7
E
95 99Right-handed 310
Helix 8
AA8
E
141 148Right-handed alpha
Helix 9
AA9
E
208 212Right-handed alpha
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There are 16 sheets in PDB entry 6XCP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 43first strand
Strand 2
A
29 35anti-parallel
Strand 3
A
19 26anti-parallel
Strand 4
A
5 8anti-parallel
Strand 5
C
35 44anti-parallel
Strand 6
C
52 59anti-parallel
Strand 7
C
62 68anti-parallel
Strand 8
C
74 76anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
40 43first strand
Strand 2
A
29 35anti-parallel
Strand 3
A
19 26anti-parallel
Strand 4
A
11 14anti-parallel
Strand 5
C
35 44anti-parallel
Strand 6
C
52 59anti-parallel
Strand 7
C
62 68anti-parallel
Strand 8
C
74 76anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 93first strand
Strand 2
A
103 110anti-parallel
Strand 3
A
145 153anti-parallel
Strand 4
A
132 134anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 93first strand
Strand 2
A
103 110anti-parallel
Strand 3
A
145 153anti-parallel
Strand 4
A
138 139anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
126 128first strand
Strand 2
A
118 123anti-parallel
Strand 3
A
161 166anti-parallel
Strand 4
A
174 177anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
125 130first strand
Strand 2
C
141 147anti-parallel
Strand 3
C
182 189anti-parallel
Strand 4
C
169 171anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
125 130first strand
Strand 2
C
141 147anti-parallel
Strand 3
C
182 189anti-parallel
Strand 4
C
175 176anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
163 165first strand
Strand 2
C
155 160anti-parallel
Strand 3
C
197 203anti-parallel
Strand 4
C
211 216anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
10 14first strand
Strand 2
D
120 125parallel
Strand 3
D
101 107anti-parallel
Strand 4
D
38 44anti-parallel
Strand 5
D
51 56anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
19 24first strand
Strand 2
D
86 91anti-parallel
Strand 3
D
77 80anti-parallel
Strand 4
D
66 67anti-parallel
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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
168 170first strand
Strand 2
D
183 192anti-parallel
Strand 3
D
147 152anti-parallel
Strand 4
D
134 140anti-parallel
Strand 5
E
134 139anti-parallel
Strand 6
E
150 160anti-parallel
Strand 7
E
198 207anti-parallel
Strand 8
E
180 182anti-parallel
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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
175 178first strand
Strand 2
D
183 192anti-parallel
Strand 3
D
147 152anti-parallel
Strand 4
D
134 140anti-parallel
Strand 5
E
134 139anti-parallel
Strand 6
E
150 160anti-parallel
Strand 7
E
198 207anti-parallel
Strand 8
E
187 188anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
5 7first strand
Strand 2
E
19 24anti-parallel
Strand 3
E
87 91anti-parallel
Strand 4
E
76 80anti-parallel
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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
10 14first strand
Strand 2
E
119 124parallel
Strand 3
E
101 107anti-parallel
Strand 4
E
38 45anti-parallel
Strand 5
E
49 56anti-parallel
Strand 6
E
65 68anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
10 14first strand
Strand 2
E
119 124parallel
Strand 3
E
101 107anti-parallel
Strand 4
E
113 115anti-parallel
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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
174 175first strand
Strand 2
E
165 171anti-parallel
Strand 3
E
217 224anti-parallel
Strand 4
E
243 250anti-parallel
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