Analysis of interatomic Contacts of Structural Units in PDB entry:
6XD0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6XD0 entry

There is 1 chain in PDB entry 6XD0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 271MET 883
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 6XD0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
272 287Right-handed alpha
Helix 2
AA2
A
321 327Right-handed alpha
Helix 3
AA3
A
328 332Right-handed 310
Helix 4
AA4
A
334 341Right-handed alpha
Helix 5
AA5
A
346 358Right-handed alpha
Helix 6
AA6
A
366 385Right-handed alpha
Helix 7
AA7
A
394 407Right-handed alpha
Helix 8
AA8
A
418 426Right-handed alpha
Helix 9
AA9
A
427 443Right-handed alpha
Helix 10
AB1
A
471 489Right-handed alpha
Helix 11
AB2
A
489 494Right-handed alpha
Helix 12
AB3
A
498 503Right-handed alpha
Helix 13
AB4
A
510 523Right-handed alpha
Helix 14
AB5
A
536 541Right-handed 310
Helix 15
AB6
A
542 551Right-handed alpha
Helix 16
AB7
A
552 556Right-handed 310
Helix 17
AB8
A
557 572Right-handed alpha
Helix 18
AB9
A
604 625Right-handed alpha
Helix 19
AC1
A
629 635Right-handed alpha
Helix 20
AC2
A
639 657Right-handed alpha
Helix 21
AC3
A
671 677Right-handed 310
Helix 22
AC4
A
678 684Right-handed alpha
Helix 23
AC5
A
702 706Right-handed 310
Helix 24
AC6
A
730 739Right-handed alpha
Helix 25
AC7
A
747 766Right-handed alpha
Helix 26
AC8
A
769 783Right-handed alpha
Helix 27
AC9
A
808 818Right-handed alpha
Helix 28
AD1
A
832 836Right-handed 310
Helix 29
AD2
A
840 847Right-handed alpha
Helix 30
AD3
A
853 875Right-handed alpha
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There are 3 sheets in PDB entry 6XD0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
303 309first strand
Strand 2
A
586 594anti-parallel
Strand 3
A
575 583anti-parallel
Strand 4
A
451 452parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
658 661first strand
Strand 2
A
664 667anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
712 717first strand
Strand 2
A
723 728anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il