Analysis of interatomic Contacts of Structural Units in PDB entry:
6XD4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6XD4 entry

There is 1 chain in PDB entry 6XD4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 34ASP 516
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 6XD4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
91 98Right-handed 310
Helix 2
AA2
A
131 134Right-handed 310
Helix 3
AA3
A
145 160Right-handed alpha
Helix 4
AA4
A
177 180Right-handed 310
Helix 5
AA5
A
181 186Right-handed alpha
Helix 6
AA6
A
190 196Right-handed alpha
Helix 7
AA7
A
269 285Right-handed alpha
Helix 8
AA8
A
293 303Right-handed alpha
Helix 9
AA9
A
323 332Right-handed alpha
Helix 10
AB1
A
441 445Right-handed 310
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There are 6 sheets in PDB entry 6XD4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 50first strand
Strand 2
A
360 367parallel
Strand 3
A
80 85anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 89first strand
Strand 2
A
343 351anti-parallel
Strand 3
A
249 266anti-parallel
Strand 4
A
213 228anti-parallel
Strand 5
A
124 130anti-parallel
Strand 6
A
135 141anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 104first strand
Strand 2
A
249 266anti-parallel
Strand 3
A
304 310anti-parallel
Strand 4
A
316 321anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 175first strand
Strand 2
A
213 228anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
448 456first strand
Strand 2
A
422 437anti-parallel
Strand 3
A
495 505anti-parallel
Strand 4
A
476 484anti-parallel
Strand 5
A
392 406anti-parallel
Strand 6
A
464 467anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
448 456first strand
Strand 2
A
422 437anti-parallel
Strand 3
A
495 505anti-parallel
Strand 4
A
476 484anti-parallel
Strand 5
A
392 406anti-parallel
Strand 6
A
372 384anti-parallel
Strand 7
A
512 514parallel
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