Analysis of interatomic Contacts of Structural Units in PDB entry:
6XDC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6XDC entry

There are 2 chains in PDB entry 6XDC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 40ASP 238
B
 SER 40ASP 238
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 6XDC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
43 61Right-handed alpha
Helix 2
AA2
A
67 100Right-handed alpha
Helix 3
AA3
A
102 134Right-handed alpha
Helix 4
AA4
A
136 141Right-handed alpha
Helix 5
AA5
A
219 224Right-handed alpha
Helix 6
AA6
B
43 61Right-handed alpha
Helix 7
AA7
B
67 100Right-handed alpha
Helix 8
AA8
B
102 133Right-handed alpha
Helix 9
AA9
B
136 141Right-handed alpha
Helix 10
AB1
B
219 224Right-handed alpha
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There are 2 sheets in PDB entry 6XDC. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 160first strand
Strand 2
A
145 148anti-parallel
Strand 3
A
200 204anti-parallel
Strand 4
A
209 218anti-parallel
Strand 5
A
228 235anti-parallel
Strand 6
A
166 172anti-parallel
Strand 7
A
183 186anti-parallel
Strand 8
A
189 192anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
158 160first strand
Strand 2
B
145 148anti-parallel
Strand 3
B
200 204anti-parallel
Strand 4
B
209 218anti-parallel
Strand 5
B
228 235anti-parallel
Strand 6
B
166 172anti-parallel
Strand 7
B
183 186anti-parallel
Strand 8
B
189 192anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il