Analysis of interatomic Contacts of Structural Units in PDB entry:
6XDD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6XDD entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 8 chains in PDB entry 6XDD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 560HIS 723
A
 PHE 725PHE 725
A
 ARG 727ARG 728
A
 GLY 730HIS 963
B
 GLU 560HIS 723
B
 PHE 725PHE 725
B
 ARG 727ARG 728
B
 GLY 730HIS 963
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 6XDD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
602 604Right-handed 310
Helix 2
AA2
A
605 620Right-handed alpha
Helix 3
AA3
A
649 655Right-handed alpha
Helix 4
AA4
A
664 682Right-handed alpha
Helix 5
AA5
A
690 692Right-handed 310
Helix 6
AA6
A
711 715Right-handed 310
Helix 7
AA7
A
739 743Right-handed 310
Helix 8
AA8
A
753 769Right-handed alpha
Helix 9
AA9
A
779 788Right-handed alpha
Helix 10
AB1
A
799 813Right-handed alpha
Helix 11
AB2
A
816 820Right-handed 310
Helix 12
AB3
A
822 828Right-handed alpha
Helix 13
AB4
A
829 833Right-handed 310
Helix 14
AB5
A
834 850Right-handed alpha
Helix 15
AB6
A
856 864Right-handed alpha
Helix 16
AB7
A
865 871Right-handed alpha
Helix 17
AB8
A
873 878Right-handed 310
Helix 18
AB9
A
879 887Right-handed alpha
Helix 19
AC1
A
896 910Right-handed alpha
Helix 20
AC2
A
911 914Right-handed 310
Helix 21
AC3
A
915 923Right-handed alpha
Helix 22
AC4
A
926 935Right-handed alpha
Helix 23
AC5
A
939 948Right-handed alpha
Helix 24
AC6
A
949 952Right-handed 310
Helix 25
AC7
A
954 961Right-handed 310
Helix 26
AC8
B
581 583Right-handed 310
Helix 27
AC9
B
602 604Right-handed 310
Helix 28
AD1
B
605 619Right-handed alpha
Helix 29
AD2
B
649 655Right-handed alpha
Helix 30
AD3
B
663 682Right-handed alpha
Helix 31
AD4
B
726 730Right-handed 310
Helix 32
AD5
B
739 744Right-handed 310
Helix 33
AD6
B
753 769Right-handed alpha
Helix 34
AD7
B
777 788Right-handed alpha
Helix 35
AD8
B
799 813Right-handed alpha
Helix 36
AD9
B
816 820Right-handed 310
Helix 37
AE1
B
822 829Right-handed alpha
Helix 38
AE2
B
830 833Right-handed 310
Helix 39
AE3
B
834 849Right-handed alpha
Helix 40
AE4
B
856 864Right-handed alpha
Helix 41
AE5
B
865 870Right-handed alpha
Helix 42
AE6
B
873 877Right-handed 310
Helix 43
AE7
B
879 888Right-handed alpha
Helix 44
AE8
B
896 910Right-handed alpha
Helix 45
AE9
B
911 914Right-handed 310
Helix 46
AF1
B
915 923Right-handed alpha
Helix 47
AF2
B
926 935Right-handed alpha
Helix 48
AF3
B
939 948Right-handed alpha
Helix 49
AF4
B
949 952Right-handed 310
Helix 50
AF5
B
954 958Right-handed 310
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There are 6 sheets in PDB entry 6XDD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
564 566first strand
Strand 2
A
569 580anti-parallel
Strand 3
A
584 591anti-parallel
Strand 4
A
594 601anti-parallel
Strand 5
A
638 643anti-parallel
Strand 6
A
628 633anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
645 648first strand
Strand 2
A
694 697anti-parallel
Strand 3
A
707 709anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
684 685first strand
Strand 2
A
716 717anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
564 566first strand
Strand 2
B
569 579anti-parallel
Strand 3
B
585 591anti-parallel
Strand 4
B
594 601anti-parallel
Strand 5
B
638 643anti-parallel
Strand 6
B
628 633anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
645 648first strand
Strand 2
B
694 697anti-parallel
Strand 3
B
707 709anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
684 685first strand
Strand 2
B
716 717anti-parallel
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