Analysis of interatomic Contacts of Structural Units in PDB entry:
6XDF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6XDF entry

There are 2 chains in PDB entry 6XDF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 560PRO 966
B
 SER 562GLU 964
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 6XDF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
602 604Right-handed 310
Helix 2
AA2
A
605 618Right-handed alpha
Helix 3
AA3
A
649 656Right-handed alpha
Helix 4
AA4
A
664 682Right-handed alpha
Helix 5
AA5
A
739 744Right-handed alpha
Helix 6
AA6
A
753 770Right-handed alpha
Helix 7
AA7
A
777 779Right-handed 310
Helix 8
AA8
A
780 788Right-handed alpha
Helix 9
AA9
A
799 813Right-handed alpha
Helix 10
AB1
A
816 820Right-handed 310
Helix 11
AB2
A
822 828Right-handed alpha
Helix 12
AB3
A
829 833Right-handed 310
Helix 13
AB4
A
834 850Right-handed alpha
Helix 14
AB5
A
856 864Right-handed alpha
Helix 15
AB6
A
865 871Right-handed alpha
Helix 16
AB7
A
873 877Right-handed 310
Helix 17
AB8
A
879 886Right-handed alpha
Helix 18
AB9
A
896 910Right-handed alpha
Helix 19
AC1
A
911 914Right-handed 310
Helix 20
AC2
A
915 923Right-handed alpha
Helix 21
AC3
A
926 937Right-handed alpha
Helix 22
AC4
A
939 948Right-handed alpha
Helix 23
AC5
A
949 952Right-handed 310
Helix 24
AC6
A
954 958Right-handed 310
Helix 25
AC7
B
602 604Right-handed 310
Helix 26
AC8
B
605 620Right-handed alpha
Helix 27
AC9
B
649 655Right-handed alpha
Helix 28
AD1
B
664 682Right-handed alpha
Helix 29
AD2
B
690 692Right-handed 310
Helix 30
AD3
B
739 743Right-handed 310
Helix 31
AD4
B
753 770Right-handed alpha
Helix 32
AD5
B
777 788Right-handed alpha
Helix 33
AD6
B
799 813Right-handed alpha
Helix 34
AD7
B
816 820Right-handed 310
Helix 35
AD8
B
822 828Right-handed alpha
Helix 36
AD9
B
829 833Right-handed 310
Helix 37
AE1
B
834 850Right-handed alpha
Helix 38
AE2
B
856 863Right-handed alpha
Helix 39
AE3
B
865 870Right-handed alpha
Helix 40
AE4
B
873 878Right-handed 310
Helix 41
AE5
B
879 888Right-handed alpha
Helix 42
AE6
B
896 910Right-handed alpha
Helix 43
AE7
B
911 914Right-handed 310
Helix 44
AE8
B
915 923Right-handed alpha
Helix 45
AE9
B
926 937Right-handed alpha
Helix 46
AF1
B
939 948Right-handed alpha
Helix 47
AF2
B
949 952Right-handed 310
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There are 6 sheets in PDB entry 6XDF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
564 566first strand
Strand 2
A
569 579anti-parallel
Strand 3
A
585 591anti-parallel
Strand 4
A
594 601anti-parallel
Strand 5
A
638 643anti-parallel
Strand 6
A
628 633anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
645 648first strand
Strand 2
A
694 697anti-parallel
Strand 3
A
707 709anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
684 685first strand
Strand 2
A
716 717anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
564 565first strand
Strand 2
B
569 579anti-parallel
Strand 3
B
585 591anti-parallel
Strand 4
B
594 601anti-parallel
Strand 5
B
638 643anti-parallel
Strand 6
B
628 633anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
645 648first strand
Strand 2
B
694 697anti-parallel
Strand 3
B
707 709anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
684 685first strand
Strand 2
B
716 717anti-parallel
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