Analysis of interatomic Contacts of Structural Units in PDB entry:
6XDG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6XDG entry

There are 5 chains in PDB entry 6XDG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
E
 THR 333GLY 526
D
 ASP 1CYS 214
B
 GLN 1PRO 220
C
 GLN 1PRO 220
A
 ALA 3THR 213
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 6XDG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
E
337 343Right-handed alpha
Helix 2
AA2
E
365 370Right-handed alpha
Helix 3
AA3
E
383 389Right-handed alpha
Helix 4
AA4
E
405 410Right-handed 310
Helix 5
AA5
E
416 422Right-handed alpha
Helix 6
AA6
D
121 128Right-handed alpha
Helix 7
AA7
D
183 189Right-handed alpha
Helix 8
AA8
B
28 32Right-handed 310
Helix 9
AA9
B
87 91Right-handed 310
Helix 10
AB1
B
192 196Right-handed 310
Helix 11
AB2
C
28 32Right-handed 310
Helix 12
AB3
C
87 91Right-handed 310
Helix 13
AB4
C
192 196Right-handed 310
Helix 14
AB5
A
125 130Right-handed alpha
Helix 15
AB6
A
185 192Right-handed alpha
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There are 21 sheets in PDB entry 6XDG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
354 358first strand
Strand 2
E
394 403anti-parallel
Strand 3
E
507 516anti-parallel
Strand 4
E
432 437anti-parallel
Strand 5
E
376 379anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
452 453first strand
Strand 2
E
493 494anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
4 7first strand
Strand 2
D
19 25anti-parallel
Strand 3
D
70 75anti-parallel
Strand 4
D
62 67anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
53 54first strand
Strand 2
D
45 49anti-parallel
Strand 3
D
33 38anti-parallel
Strand 4
D
85 90anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
114 118first strand
Strand 2
D
129 139anti-parallel
Strand 3
D
173 182anti-parallel
Strand 4
D
159 163anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
153 155first strand
Strand 2
D
145 150anti-parallel
Strand 3
D
191 197anti-parallel
Strand 4
D
206 210anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 6first strand
Strand 2
B
17 25anti-parallel
Strand 3
B
78 84anti-parallel
Strand 4
B
68 71anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 60first strand
Strand 2
B
45 51anti-parallel
Strand 3
B
33 39anti-parallel
Strand 4
B
97 99anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
92 94first strand
Strand 2
B
114 116anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
127 131first strand
Strand 2
B
143 150anti-parallel
Strand 3
B
183 191anti-parallel
Strand 4
B
170 177anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
158 161first strand
Strand 2
B
203 206anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3 6first strand
Strand 2
C
18 25anti-parallel
Strand 3
C
78 83anti-parallel
Strand 4
C
68 71anti-parallel
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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
58 60first strand
Strand 2
C
45 51anti-parallel
Strand 3
C
34 39anti-parallel
Strand 4
C
92 96anti-parallel
Strand 5
C
114 116anti-parallel
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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
127 131first strand
Strand 2
C
144 152anti-parallel
Strand 3
C
183 190anti-parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
205 206first strand
Strand 2
C
213 214anti-parallel
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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 12first strand
Strand 2
A
106 109parallel
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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
17 23first strand
Strand 2
A
72 78anti-parallel
Strand 3
A
64 69anti-parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 51first strand
Strand 2
A
36 40anti-parallel
Strand 3
A
87 92anti-parallel
Strand 4
A
100 101anti-parallel
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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 122first strand
Strand 2
A
135 143anti-parallel
Strand 3
A
176 178anti-parallel
Strand 4
A
169 170anti-parallel
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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 122first strand
Strand 2
A
135 143anti-parallel
Strand 3
A
182 183anti-parallel
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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 159first strand
Strand 2
A
149 153anti-parallel
Strand 3
A
195 200anti-parallel
Strand 4
A
207 210anti-parallel
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