Analysis of interatomic Contacts of Structural Units in PDB entry:
6XFR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6XFR entry

There are 2 chains in PDB entry 6XFR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 7GLN 226
B
 GLN 6GLN 226
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 6XFR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
52 67Right-handed alpha
Helix 2
AA2
A
80 85Right-handed alpha
Helix 3
AA3
A
86 93Right-handed alpha
Helix 4
AA4
A
101 110Right-handed alpha
Helix 5
AA5
A
160 162Right-handed 310
Helix 6
AA6
A
180 192Right-handed alpha
Helix 7
AA7
A
208 218Right-handed alpha
Helix 8
AA8
B
52 67Right-handed alpha
Helix 9
AA9
B
80 85Right-handed alpha
Helix 10
AB1
B
86 92Right-handed alpha
Helix 11
AB2
B
101 110Right-handed alpha
Helix 12
AB3
B
160 162Right-handed 310
Helix 13
AB4
B
180 192Right-handed alpha
Helix 14
AB5
B
208 218Right-handed alpha
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There are 6 sheets in PDB entry 6XFR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 14first strand
Strand 2
A
17 26anti-parallel
Strand 3
A
29 40anti-parallel
Strand 4
A
43 47anti-parallel
Strand 5
A
71 75parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
98 100first strand
Strand 2
A
117 119parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 127first strand
Strand 2
A
130 135anti-parallel
Strand 3
A
147 150anti-parallel
Strand 4
A
155 159anti-parallel
Strand 5
A
197 200parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 14first strand
Strand 2
B
17 25anti-parallel
Strand 3
B
30 40anti-parallel
Strand 4
B
43 47anti-parallel
Strand 5
B
71 75parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
98 100first strand
Strand 2
B
117 119parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
123 127first strand
Strand 2
B
130 135anti-parallel
Strand 3
B
147 150anti-parallel
Strand 4
B
155 159anti-parallel
Strand 5
B
197 200parallel
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