Analysis of interatomic Contacts of Structural Units in PDB entry:
6XGP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6XGP entry

There are 2 chains in PDB entry 6XGP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 4	SER 357
B	LEU 4	SER 357

There are 18 helices in PDB entry 6XGP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	17	Right-handed alpha
Helix 2	AA2	A	23	28	Right-handed 310
Helix 3	AA3	A	42	44	Right-handed 310
Helix 4	AA4	A	65	68	Right-handed 310
Helix 5	AA5	A	110	143	Right-handed alpha
Helix 6	AA6	A	162	164	Right-handed 310
Helix 7	AA7	A	177	196	Right-handed alpha
Helix 8	AA8	A	209	225	Right-handed alpha
Helix 9	AA9	A	296	299	Right-handed 310
Helix 10	AB1	B	6	17	Right-handed alpha
Helix 11	AB2	B	23	28	Right-handed 310
Helix 12	AB3	B	42	44	Right-handed 310
Helix 13	AB4	B	65	68	Right-handed 310
Helix 14	AB5	B	109	143	Right-handed alpha
Helix 15	AB6	B	162	164	Right-handed 310
Helix 16	AB7	B	177	196	Right-handed alpha
Helix 17	AB8	B	209	225	Right-handed alpha
Helix 18	AB9	B	296	299	Right-handed 310

There are 16 sheets in PDB entry 6XGP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	33	first strand
Strand 2	A	301	304	parallel
Strand 3	A	340	343	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	39	40	first strand
Strand 2	A	73	74	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	63	first strand
Strand 2	A	54	59	anti-parallel
Strand 3	A	69	70	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	63	first strand
Strand 2	A	54	59	anti-parallel
Strand 3	A	155	158	anti-parallel
Strand 4	A	144	147	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	84	first strand
Strand 2	A	332	337	anti-parallel
Strand 3	A	320	325	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	166	168	first strand
Strand 2	A	350	354	parallel
Strand 3	A	290	294	anti-parallel
Strand 4	A	204	208	anti-parallel
Strand 5	A	266	271	parallel
Strand 6	A	251	257	anti-parallel
Strand 7	A	230	231	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	274	275	first strand
Strand 2	A	283	284	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	307	309	first strand
Strand 2	A	313	315	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	33	first strand
Strand 2	B	301	305	parallel
Strand 3	B	339	343	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	39	40	first strand
Strand 2	B	73	74	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	62	63	first strand
Strand 2	B	54	59	anti-parallel
Strand 3	B	69	70	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	62	63	first strand
Strand 2	B	54	59	anti-parallel
Strand 3	B	155	158	anti-parallel
Strand 4	B	144	147	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	82	84	first strand
Strand 2	B	332	337	anti-parallel
Strand 3	B	320	325	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	166	168	first strand
Strand 2	B	350	354	parallel
Strand 3	B	290	294	anti-parallel
Strand 4	B	204	208	anti-parallel
Strand 5	B	266	271	parallel
Strand 6	B	251	257	anti-parallel
Strand 7	B	230	231	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	274	277	first strand
Strand 2	B	281	284	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	307	309	first strand
Strand 2	B	313	315	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6XGP

Analysis of interatomic Contacts of Structural Units in PDB entry:
6XGP