Analysis of interatomic Contacts of Structural Units in PDB entry:
6XGQ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6XGQ entry

There are 14 chains in PDB entry 6XGQ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	SER 354
B	ALA 2	SER 354
C	ALA 2	SER 354
D	ALA 2	SER 354
E	ALA 2	SER 354
F	ALA 2	SER 354
G	LEU 4	SER 354
a	THR 10	TYR 139
b	THR 10	TYR 139
c	THR 10	TYR 139
d	THR 10	TYR 139
e	THR 10	TYR 139
f	THR 10	TYR 139
g	THR 10	TYR 139

There are 57 helices in PDB entry 6XGQ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	107	139	Right-handed alpha
Helix 2	AA2	A	174	193	Right-handed alpha
Helix 3	AA3	A	205	217	Right-handed alpha
Helix 4	AA4	A	293	296	Right-handed 310
Helix 5	AA5	A	307	311	Right-handed 310
Helix 6	AA6	A	343	345	Right-handed 310
Helix 7	AA7	B	24	28	Right-handed 310
Helix 8	AA8	B	105	140	Right-handed alpha
Helix 9	AA9	B	174	191	Right-handed alpha
Helix 10	AB1	B	205	217	Right-handed alpha
Helix 11	AB2	B	293	295	Right-handed 310
Helix 12	AB3	B	307	311	Right-handed 310
Helix 13	AB4	C	23	27	Right-handed 310
Helix 14	AB5	C	86	91	Right-handed alpha
Helix 15	AB6	C	107	139	Right-handed alpha
Helix 16	AB7	C	174	191	Right-handed alpha
Helix 17	AB8	C	205	217	Right-handed alpha
Helix 18	AB9	C	293	296	Right-handed 310
Helix 19	AC1	C	307	311	Right-handed 310
Helix 20	AC2	D	23	28	Right-handed 310
Helix 21	AC3	D	86	90	Right-handed 310
Helix 22	AC4	D	105	139	Right-handed alpha
Helix 23	AC5	D	174	193	Right-handed alpha
Helix 24	AC6	D	205	217	Right-handed alpha
Helix 25	AC7	D	293	295	Right-handed 310
Helix 26	AC8	D	307	312	Right-handed 310
Helix 27	AC9	D	343	345	Right-handed 310
Helix 28	AD1	E	23	28	Right-handed 310
Helix 29	AD2	E	107	139	Right-handed alpha
Helix 30	AD3	E	174	193	Right-handed alpha
Helix 31	AD4	E	206	217	Right-handed alpha
Helix 32	AD5	E	307	312	Right-handed 310
Helix 33	AD6	E	343	345	Right-handed 310
Helix 34	AD7	F	23	28	Right-handed 310
Helix 35	AD8	F	86	90	Right-handed 310
Helix 36	AD9	F	107	139	Right-handed alpha
Helix 37	AE1	F	174	193	Right-handed alpha
Helix 38	AE2	F	205	217	Right-handed alpha
Helix 39	AE3	F	293	296	Right-handed 310
Helix 40	AE4	F	307	311	Right-handed 310
Helix 41	AE5	G	105	139	Right-handed alpha
Helix 42	AE6	G	159	161	Right-handed 310
Helix 43	AE7	G	174	193	Right-handed alpha
Helix 44	AE8	G	205	216	Right-handed alpha
Helix 45	AE9	G	238	242	Right-handed 310
Helix 46	AF1	G	293	296	Right-handed 310
Helix 47	AF2	G	307	311	Right-handed 310
Helix 48	AF3	a	80	84	Right-handed 310
Helix 49	AF4	a	120	128	Right-handed alpha
Helix 50	AF5	b	120	127	Right-handed alpha
Helix 51	AF6	c	80	83	Right-handed 310
Helix 52	AF7	c	120	128	Right-handed alpha
Helix 53	AF8	d	80	84	Right-handed 310
Helix 54	AF9	d	120	128	Right-handed alpha
Helix 55	AG1	e	120	128	Right-handed alpha
Helix 56	AG2	f	120	128	Right-handed alpha
Helix 57	AG3	g	120	127	Right-handed alpha

There are 61 sheets in PDB entry 6XGQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9, AG1, AG2, AG3, AG4, AG5, AG6, AG7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	18	first strand
Strand 2	B	38	47	parallel
Strand 3	B	70	74	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	33	first strand
Strand 2	A	298	301	parallel
Strand 3	A	337	340	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	69	74	first strand
Strand 2	A	38	47	anti-parallel
Strand 3	F	8	10	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	69	74	first strand
Strand 2	A	38	47	anti-parallel
Strand 3	F	14	18	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	63	first strand
Strand 2	F	81	85	parallel
Strand 3	F	328	333	anti-parallel
Strand 4	F	318	319	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	63	first strand
Strand 2	F	81	85	parallel
Strand 3	F	328	333	anti-parallel
Strand 4	F	322	323	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	317	322	first strand
Strand 2	A	329	334	anti-parallel
Strand 3	A	81	85	anti-parallel
Strand 4	B	62	63	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	141	144	first strand
Strand 2	A	152	155	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	163	165	first strand
Strand 2	A	347	351	parallel
Strand 3	A	287	291	anti-parallel
Strand 4	A	201	204	anti-parallel
Strand 5	A	264	268	parallel
Strand 6	A	248	253	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	271	273	first strand
Strand 2	A	279	281	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	10	first strand
Strand 2	C	38	46	parallel
Strand 3	C	69	74	anti-parallel
Strand 4	g	19	20	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	14	17	first strand
Strand 2	C	38	46	parallel
Strand 3	C	69	74	anti-parallel
Strand 4	g	24	25	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	33	first strand
Strand 2	B	297	301	parallel
Strand 3	B	339	341	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	317	320	first strand
Strand 2	B	331	334	anti-parallel
Strand 3	B	81	83	anti-parallel
Strand 4	C	62	63	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	141	144	first strand
Strand 2	B	152	155	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	163	165	first strand
Strand 2	B	347	351	parallel
Strand 3	B	287	291	anti-parallel
Strand 4	B	201	204	anti-parallel
Strand 5	B	264	267	parallel
Strand 6	B	249	253	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	271	273	first strand
Strand 2	B	279	281	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	8	10	first strand
Strand 2	D	38	46	parallel
Strand 3	C	14	17	parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	8	10	first strand
Strand 2	D	38	46	parallel
Strand 3	D	70	74	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	30	33	first strand
Strand 2	C	298	301	parallel
Strand 3	C	337	340	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	317	323	first strand
Strand 2	C	328	334	anti-parallel
Strand 3	C	81	85	anti-parallel
Strand 4	D	62	63	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	143	144	first strand
Strand 2	C	152	153	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	163	165	first strand
Strand 2	C	347	351	parallel
Strand 3	C	288	291	anti-parallel
Strand 4	C	201	204	anti-parallel
Strand 5	C	264	268	parallel
Strand 6	C	248	252	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	271	273	first strand
Strand 2	C	279	281	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	8	17	first strand
Strand 2	E	38	46	parallel
Strand 3	E	69	74	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	30	33	first strand
Strand 2	D	297	301	parallel
Strand 3	D	337	341	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	317	323	first strand
Strand 2	D	328	334	anti-parallel
Strand 3	D	81	85	anti-parallel
Strand 4	E	62	63	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	141	144	first strand
Strand 2	D	152	155	anti-parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	163	165	first strand
Strand 2	D	347	351	parallel
Strand 3	D	287	291	anti-parallel
Strand 4	D	201	204	anti-parallel
Strand 5	D	264	268	parallel
Strand 6	D	248	252	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	271	273	first strand
Strand 2	D	279	281	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	8	18	first strand
Strand 2	F	38	47	parallel
Strand 3	F	69	74	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	30	33	first strand
Strand 2	E	297	301	parallel
Strand 3	E	337	341	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	317	323	first strand
Strand 2	E	328	334	anti-parallel
Strand 3	E	81	85	anti-parallel
Strand 4	F	62	63	parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	141	144	first strand
Strand 2	E	152	155	anti-parallel

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There are 6 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	164	165	first strand
Strand 2	E	347	351	parallel
Strand 3	E	287	291	anti-parallel
Strand 4	E	201	205	anti-parallel
Strand 5	E	264	268	parallel
Strand 6	E	248	253	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	271	273	first strand
Strand 2	E	279	281	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	30	33	first strand
Strand 2	F	298	301	parallel
Strand 3	F	337	340	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	141	144	first strand
Strand 2	F	152	155	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	163	165	first strand
Strand 2	F	347	351	parallel
Strand 3	F	287	291	anti-parallel
Strand 4	F	201	203	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	248	253	first strand
Strand 2	F	264	268	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	271	273	first strand
Strand 2	F	279	281	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	30	33	first strand
Strand 2	G	298	301	parallel
Strand 3	G	337	340	anti-parallel

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There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	39	40	first strand
Strand 2	G	71	75	anti-parallel
Strand 3	a	18	23	anti-parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	82	85	first strand
Strand 2	G	328	334	anti-parallel
Strand 3	G	317	323	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	141	144	first strand
Strand 2	G	152	155	anti-parallel

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There are 6 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	163	165	first strand
Strand 2	G	347	351	parallel
Strand 3	G	287	291	anti-parallel
Strand 4	G	201	204	anti-parallel
Strand 5	G	264	268	parallel
Strand 6	G	248	250	anti-parallel

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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	271	272	first strand
Strand 2	G	280	281	anti-parallel

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There are 5 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	39	43	first strand
Strand 2	a	98	102	anti-parallel
Strand 3	a	87	89	anti-parallel
Strand 4	a	53	55	anti-parallel
Strand 5	a	63	64	anti-parallel

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There are 2 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	106	107	first strand
Strand 2	a	134	135	parallel

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There are 5 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	38	43	first strand
Strand 2	b	98	108	anti-parallel
Strand 3	b	87	89	anti-parallel
Strand 4	b	53	55	anti-parallel
Strand 5	b	63	64	anti-parallel

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There are 3 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	38	43	first strand
Strand 2	b	98	108	anti-parallel
Strand 3	b	133	136	parallel

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There are 5 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	39	43	first strand
Strand 2	c	98	102	anti-parallel
Strand 3	c	85	89	anti-parallel
Strand 4	c	53	56	anti-parallel
Strand 5	c	62	64	anti-parallel

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There are 2 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	106	108	first strand
Strand 2	c	134	136	parallel

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There are 5 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	38	43	first strand
Strand 2	d	98	104	anti-parallel
Strand 3	d	87	89	anti-parallel
Strand 4	d	53	56	anti-parallel
Strand 5	d	62	64	anti-parallel

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There are 2 strands in AG1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	106	107	first strand
Strand 2	d	134	135	parallel

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There are 4 strands in AG2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	39	42	first strand
Strand 2	e	99	102	anti-parallel
Strand 3	e	87	89	anti-parallel
Strand 4	e	53	54	anti-parallel

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There are 2 strands in AG3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	105	107	first strand
Strand 2	e	133	135	parallel

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There are 5 strands in AG4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	39	42	first strand
Strand 2	f	99	102	anti-parallel
Strand 3	f	85	89	anti-parallel
Strand 4	f	53	55	anti-parallel
Strand 5	f	63	64	anti-parallel

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There are 2 strands in AG5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	106	108	first strand
Strand 2	f	134	136	parallel

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There are 4 strands in AG6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	39	43	first strand
Strand 2	g	98	102	anti-parallel
Strand 3	g	87	89	anti-parallel
Strand 4	g	53	54	anti-parallel

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There are 2 strands in AG7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	106	107	first strand
Strand 2	g	134	135	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6XGQ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6XGQ