Analysis of interatomic Contacts of Structural Units in PDB entry:
6XGZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6XGZ entry

There are 7 chains in PDB entry 6XGZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 4	GLY 268
B	GLU -4	ARG 97
C	SER 4	PRO 267
D	GLU -4	ARG 97
E	SER 4	GLY 268
F	GLU -4	ARG 97
G	SER 4	SER 202

There are 65 helices in PDB entry 6XGZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	46	55	Right-handed alpha
Helix 2	AA2	A	76	85	Right-handed alpha
Helix 3	AA3	A	101	114	Right-handed alpha
Helix 4	AA4	A	117	133	Right-handed alpha
Helix 5	AA5	A	134	138	Right-handed 310
Helix 6	AA6	A	141	145	Right-handed 310
Helix 7	AA7	A	146	159	Right-handed alpha
Helix 8	AA8	A	176	195	Right-handed alpha
Helix 9	AA9	A	204	210	Right-handed alpha
Helix 10	AB1	A	228	234	Right-handed alpha
Helix 11	AB2	A	237	246	Right-handed alpha
Helix 12	AB3	A	260	266	Right-handed alpha
Helix 13	AB4	B	25	31	Right-handed alpha
Helix 14	AB5	B	31	36	Right-handed alpha
Helix 15	AB6	B	51	68	Right-handed alpha
Helix 16	AB7	B	78	88	Right-handed alpha
Helix 17	AB8	C	46	55	Right-handed alpha
Helix 18	AB9	C	76	85	Right-handed alpha
Helix 19	AC1	C	101	114	Right-handed alpha
Helix 20	AC2	C	117	133	Right-handed alpha
Helix 21	AC3	C	134	138	Right-handed 310
Helix 22	AC4	C	141	145	Right-handed 310
Helix 23	AC5	C	146	159	Right-handed alpha
Helix 24	AC6	C	176	195	Right-handed alpha
Helix 25	AC7	C	204	210	Right-handed alpha
Helix 26	AC8	C	228	234	Right-handed alpha
Helix 27	AC9	C	237	248	Right-handed alpha
Helix 28	AD1	C	260	266	Right-handed alpha
Helix 29	AD2	D	25	31	Right-handed alpha
Helix 30	AD3	D	31	36	Right-handed alpha
Helix 31	AD4	D	51	68	Right-handed alpha
Helix 32	AD5	D	78	88	Right-handed alpha
Helix 33	AD6	E	46	55	Right-handed alpha
Helix 34	AD7	E	76	84	Right-handed alpha
Helix 35	AD8	E	101	114	Right-handed alpha
Helix 36	AD9	E	117	133	Right-handed alpha
Helix 37	AE1	E	134	138	Right-handed 310
Helix 38	AE2	E	141	145	Right-handed 310
Helix 39	AE3	E	146	147	Right-handed 310
Helix 40	AE4	E	148	159	Right-handed alpha
Helix 41	AE5	E	176	195	Right-handed alpha
Helix 42	AE6	E	204	212	Right-handed alpha
Helix 43	AE7	E	228	235	Right-handed alpha
Helix 44	AE8	E	237	246	Right-handed alpha
Helix 45	AE9	E	260	266	Right-handed alpha
Helix 46	AF1	F	25	31	Right-handed alpha
Helix 47	AF2	F	31	36	Right-handed alpha
Helix 48	AF3	F	51	68	Right-handed alpha
Helix 49	AF4	F	78	88	Right-handed alpha
Helix 50	AF5	G	46	55	Right-handed alpha
Helix 51	AF6	G	76	85	Right-handed alpha
Helix 52	AF7	G	101	114	Right-handed alpha
Helix 53	AF8	G	117	133	Right-handed alpha
Helix 54	AF9	G	134	138	Right-handed 310
Helix 55	AG1	G	141	145	Right-handed 310
Helix 56	AG2	G	146	159	Right-handed alpha
Helix 57	AG3	G	176	195	Right-handed alpha
Helix 58	AG4	G	204	212	Right-handed alpha
Helix 59	AG5	G	228	234	Right-handed alpha
Helix 60	AG6	G	237	248	Right-handed alpha
Helix 61	AG7	G	260	266	Right-handed alpha
Helix 62	AG8	H	25	31	Right-handed alpha
Helix 63	AG9	H	31	36	Right-handed alpha
Helix 64	AH1	H	51	68	Right-handed alpha
Helix 65	AH2	H	78	88	Right-handed alpha

There are 13 sheets in PDB entry 6XGZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	21	32	first strand
Strand 2	A	7	18	anti-parallel
Strand 3	A	62	67	anti-parallel
Strand 4	A	70	71	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	90	first strand
Strand 2	A	165	169	parallel
Strand 3	A	197	201	parallel
Strand 4	A	36	40	parallel
Strand 5	A	214	219	parallel
Strand 6	A	222	226	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	-2	1	first strand
Strand 2	B	5	10	anti-parallel
Strand 3	B	13	20	anti-parallel
Strand 4	B	41	50	parallel
Strand 5	B	73	75	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	21	32	first strand
Strand 2	C	7	18	anti-parallel
Strand 3	C	62	67	anti-parallel
Strand 4	C	70	71	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	87	90	first strand
Strand 2	C	165	169	parallel
Strand 3	C	197	201	parallel
Strand 4	C	36	40	parallel
Strand 5	C	214	219	parallel
Strand 6	C	222	227	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	-2	1	first strand
Strand 2	D	5	10	anti-parallel
Strand 3	D	13	20	anti-parallel
Strand 4	D	41	50	parallel
Strand 5	D	73	75	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	30	32	first strand
Strand 2	E	7	15	anti-parallel
Strand 3	E	62	67	anti-parallel
Strand 4	E	70	71	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	17	18	first strand
Strand 2	E	21	22	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	87	90	first strand
Strand 2	E	165	169	parallel
Strand 3	E	197	201	parallel
Strand 4	E	36	40	parallel
Strand 5	E	214	219	parallel
Strand 6	E	222	227	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	-2	0	first strand
Strand 2	F	5	10	anti-parallel
Strand 3	F	13	20	anti-parallel
Strand 4	F	41	50	parallel
Strand 5	F	73	75	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	21	32	first strand
Strand 2	G	7	18	anti-parallel
Strand 3	G	62	67	anti-parallel
Strand 4	G	70	71	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	87	90	first strand
Strand 2	G	165	169	parallel
Strand 3	G	197	201	parallel
Strand 4	G	36	40	parallel
Strand 5	G	214	219	parallel
Strand 6	G	222	227	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	-3	1	first strand
Strand 2	H	5	10	anti-parallel
Strand 3	H	13	20	anti-parallel
Strand 4	H	41	50	parallel
Strand 5	H	73	75	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6XGZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6XGZ