Analysis of interatomic Contacts of Structural Units in PDB entry:
6XHH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6XHH entry

There are 2 chains in PDB entry 6XHH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 521TYR 699
B
 MET 521LEU 700
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 6XHH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
521 534Right-handed alpha
Helix 2
AA2
A
537 554Right-handed alpha
Helix 3
AA3
A
590 596Right-handed alpha
Helix 4
AA4
A
598 604Right-handed 310
Helix 5
AA5
A
634 644Right-handed alpha
Helix 6
AA6
A
676 699Right-handed alpha
Helix 7
AA7
B
522 534Right-handed alpha
Helix 8
AA8
B
537 554Right-handed alpha
Helix 9
AA9
B
590 596Right-handed alpha
Helix 10
AB1
B
598 604Right-handed 310
Helix 11
AB2
B
634 644Right-handed alpha
Helix 12
AB3
B
676 700Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 6XHH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
587 588first strand
Strand 2
A
569 576anti-parallel
Strand 3
A
557 563anti-parallel
Strand 4
A
659 668anti-parallel
Strand 5
A
648 656anti-parallel
Strand 6
A
607 611anti-parallel
Strand 7
A
615 616anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
619 620first strand
Strand 2
A
623 624anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
587 588first strand
Strand 2
B
569 576anti-parallel
Strand 3
B
557 563anti-parallel
Strand 4
B
659 668anti-parallel
Strand 5
B
648 656anti-parallel
Strand 6
B
607 611anti-parallel
Strand 7
B
615 616anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
619 620first strand
Strand 2
B
623 624anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il