Analysis of interatomic Contacts of Structural Units in PDB entry:
6XJ5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6XJ5 entry

There are 12 chains in PDB entry 6XJ5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 26	GLY 414
B	GLN 26	THR 202
B	ALA 204	GLY 414
C	GLN 26	GLY 414
D	LYS 27	THR 202
D	ALA 204	GLY 414
E	GLN 26	GLY 414
F	LEU 24	THR 202
F	ALA 204	GLY 414
G	GLN 26	ALA 413
H	GLN 26	THR 202
H	ALA 204	GLY 414

There are110 helices in PDB entry 6XJ5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	29	39	Right-handed alpha
Helix 2	AA2	A	39	52	Right-handed alpha
Helix 3	AA3	A	59	76	Right-handed alpha
Helix 4	AA4	A	120	125	Right-handed alpha
Helix 5	AA5	A	142	159	Right-handed alpha
Helix 6	AA6	A	182	191	Right-handed alpha
Helix 7	AA7	A	233	237	Right-handed 310
Helix 8	AA8	A	239	250	Right-handed alpha
Helix 9	AA9	A	251	255	Right-handed 310
Helix 10	AB1	A	291	306	Right-handed alpha
Helix 11	AB2	A	329	347	Right-handed alpha
Helix 12	AB3	A	362	367	Right-handed alpha
Helix 13	AB4	A	368	370	Right-handed 310
Helix 14	AB5	A	396	413	Right-handed alpha
Helix 15	AB6	B	29	39	Right-handed alpha
Helix 16	AB7	B	39	52	Right-handed alpha
Helix 17	AB8	B	59	76	Right-handed alpha
Helix 18	AB9	B	120	125	Right-handed alpha
Helix 19	AC1	B	142	159	Right-handed alpha
Helix 20	AC2	B	182	191	Right-handed alpha
Helix 21	AC3	B	233	237	Right-handed 310
Helix 22	AC4	B	239	250	Right-handed alpha
Helix 23	AC5	B	251	256	Right-handed 310
Helix 24	AC6	B	291	306	Right-handed alpha
Helix 25	AC7	B	329	347	Right-handed alpha
Helix 26	AC8	B	362	367	Right-handed alpha
Helix 27	AC9	B	368	370	Right-handed 310
Helix 28	AD1	B	396	413	Right-handed alpha
Helix 29	AD2	C	29	39	Right-handed alpha
Helix 30	AD3	C	39	52	Right-handed alpha
Helix 31	AD4	C	59	76	Right-handed alpha
Helix 32	AD5	C	120	125	Right-handed alpha
Helix 33	AD6	C	142	159	Right-handed alpha
Helix 34	AD7	C	182	191	Right-handed alpha
Helix 35	AD8	C	233	237	Right-handed 310
Helix 36	AD9	C	239	250	Right-handed alpha
Helix 37	AE1	C	291	306	Right-handed alpha
Helix 38	AE2	C	329	347	Right-handed alpha
Helix 39	AE3	C	362	367	Right-handed alpha
Helix 40	AE4	C	368	370	Right-handed 310
Helix 41	AE5	C	396	413	Right-handed alpha
Helix 42	AE6	D	29	39	Right-handed alpha
Helix 43	AE7	D	39	52	Right-handed alpha
Helix 44	AE8	D	59	76	Right-handed alpha
Helix 45	AE9	D	120	125	Right-handed alpha
Helix 46	AF1	D	142	159	Right-handed alpha
Helix 47	AF2	D	182	191	Right-handed alpha
Helix 48	AF3	D	233	237	Right-handed 310
Helix 49	AF4	D	239	250	Right-handed alpha
Helix 50	AF5	D	251	257	Right-handed 310
Helix 51	AF6	D	291	306	Right-handed alpha
Helix 52	AF7	D	333	347	Right-handed alpha
Helix 53	AF8	D	362	367	Right-handed alpha
Helix 54	AF9	D	368	370	Right-handed 310
Helix 55	AG1	D	396	413	Right-handed alpha
Helix 56	AG2	E	30	39	Right-handed alpha
Helix 57	AG3	E	39	52	Right-handed alpha
Helix 58	AG4	E	59	76	Right-handed alpha
Helix 59	AG5	E	120	125	Right-handed alpha
Helix 60	AG6	E	142	159	Right-handed alpha
Helix 61	AG7	E	182	191	Right-handed alpha
Helix 62	AG8	E	233	237	Right-handed 310
Helix 63	AG9	E	239	250	Right-handed alpha
Helix 64	AH1	E	291	306	Right-handed alpha
Helix 65	AH2	E	329	347	Right-handed alpha
Helix 66	AH3	E	362	367	Right-handed alpha
Helix 67	AH4	E	368	370	Right-handed 310
Helix 68	AH5	E	396	414	Right-handed alpha
Helix 69	AH6	F	29	39	Right-handed alpha
Helix 70	AH7	F	39	52	Right-handed alpha
Helix 71	AH8	F	59	76	Right-handed alpha
Helix 72	AH9	F	120	125	Right-handed alpha
Helix 73	AI1	F	142	159	Right-handed alpha
Helix 74	AI2	F	182	191	Right-handed alpha
Helix 75	AI3	F	233	237	Right-handed 310
Helix 76	AI4	F	239	250	Right-handed alpha
Helix 77	AI5	F	251	255	Right-handed 310
Helix 78	AI6	F	291	306	Right-handed alpha
Helix 79	AI7	F	329	347	Right-handed alpha
Helix 80	AI8	F	362	367	Right-handed alpha
Helix 81	AI9	F	368	370	Right-handed 310
Helix 82	AJ1	F	396	414	Right-handed alpha
Helix 83	AJ2	G	29	39	Right-handed alpha
Helix 84	AJ3	G	39	52	Right-handed alpha
Helix 85	AJ4	G	59	76	Right-handed alpha
Helix 86	AJ5	G	120	125	Right-handed alpha
Helix 87	AJ6	G	142	159	Right-handed alpha
Helix 88	AJ7	G	182	191	Right-handed alpha
Helix 89	AJ8	G	233	237	Right-handed 310
Helix 90	AJ9	G	239	250	Right-handed alpha
Helix 91	AK1	G	251	255	Right-handed 310
Helix 92	AK2	G	291	306	Right-handed alpha
Helix 93	AK3	G	329	347	Right-handed alpha
Helix 94	AK4	G	362	367	Right-handed alpha
Helix 95	AK5	G	368	370	Right-handed 310
Helix 96	AK6	G	396	413	Right-handed alpha
Helix 97	AK7	H	29	39	Right-handed alpha
Helix 98	AK8	H	39	52	Right-handed alpha
Helix 99	AK9	H	59	76	Right-handed alpha
Helix 100	AL1	H	120	125	Right-handed alpha
Helix 101	AL2	H	142	159	Right-handed alpha
Helix 102	AL3	H	182	191	Right-handed alpha
Helix 103	AL4	H	233	237	Right-handed 310
Helix 104	AL5	H	239	250	Right-handed alpha
Helix 105	AL6	H	251	255	Right-handed 310
Helix 106	AL7	H	291	306	Right-handed alpha
Helix 107	AL8	H	329	347	Right-handed alpha
Helix 108	AL9	H	362	367	Right-handed alpha
Helix 109	AM1	H	368	370	Right-handed 310
Helix 110	AM2	H	396	413	Right-handed alpha

There are 45 sheets in PDB entry 6XJ5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	80	85	first strand
Strand 2	A	93	100	anti-parallel
Strand 3	A	166	172	anti-parallel
Strand 4	A	107	112	parallel
Strand 5	A	195	198	parallel
Strand 6	A	373	374	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	129	first strand
Strand 2	A	133	135	anti-parallel
Strand 3	A	391	393	anti-parallel
Strand 4	A	381	382	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	208	210	first strand
Strand 2	A	352	354	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	212	213	first strand
Strand 2	A	327	328	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	262	270	first strand
Strand 2	A	280	289	anti-parallel
Strand 3	A	215	224	anti-parallel
Strand 4	A	315	322	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	228	229	first strand
Strand 2	A	276	277	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	80	85	first strand
Strand 2	B	93	100	anti-parallel
Strand 3	B	166	172	anti-parallel
Strand 4	B	107	112	parallel
Strand 5	B	195	198	parallel
Strand 6	B	373	374	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	130	first strand
Strand 2	B	133	135	anti-parallel
Strand 3	B	391	393	anti-parallel
Strand 4	B	380	382	anti-parallel
Strand 5	B	202	203	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	208	210	first strand
Strand 2	B	352	354	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	212	213	first strand
Strand 2	B	327	328	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	262	270	first strand
Strand 2	B	280	289	anti-parallel
Strand 3	B	215	224	anti-parallel
Strand 4	B	315	322	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	80	85	first strand
Strand 2	C	93	100	anti-parallel
Strand 3	C	166	172	anti-parallel
Strand 4	C	107	112	parallel
Strand 5	C	195	198	parallel
Strand 6	C	373	374	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	128	129	first strand
Strand 2	C	133	135	anti-parallel
Strand 3	C	391	393	anti-parallel
Strand 4	C	380	382	anti-parallel
Strand 5	C	202	203	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	208	210	first strand
Strand 2	C	352	354	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	212	213	first strand
Strand 2	C	327	328	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	262	270	first strand
Strand 2	C	280	289	anti-parallel
Strand 3	C	215	224	anti-parallel
Strand 4	C	315	322	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	228	229	first strand
Strand 2	C	276	277	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	80	85	first strand
Strand 2	D	93	100	anti-parallel
Strand 3	D	166	172	anti-parallel
Strand 4	D	107	112	parallel
Strand 5	D	195	198	parallel
Strand 6	D	373	374	parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	128	129	first strand
Strand 2	D	133	135	anti-parallel
Strand 3	D	391	393	anti-parallel
Strand 4	D	380	382	anti-parallel
Strand 5	D	202	203	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	208	210	first strand
Strand 2	D	352	354	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	212	213	first strand
Strand 2	D	327	328	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	262	270	first strand
Strand 2	D	280	289	anti-parallel
Strand 3	D	215	224	anti-parallel
Strand 4	D	315	322	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	228	229	first strand
Strand 2	D	276	277	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	80	85	first strand
Strand 2	E	93	100	anti-parallel
Strand 3	E	166	172	anti-parallel
Strand 4	E	107	112	parallel
Strand 5	E	195	198	parallel
Strand 6	E	373	374	parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	128	129	first strand
Strand 2	E	133	135	anti-parallel
Strand 3	E	391	393	anti-parallel
Strand 4	E	380	382	anti-parallel
Strand 5	E	202	203	parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	208	210	first strand
Strand 2	E	352	354	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	212	213	first strand
Strand 2	E	327	328	anti-parallel

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There are 8 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	315	322	first strand
Strand 2	E	215	224	anti-parallel
Strand 3	E	280	289	anti-parallel
Strand 4	E	262	270	anti-parallel
Strand 5	H	262	270	anti-parallel
Strand 6	H	280	289	anti-parallel
Strand 7	H	215	224	anti-parallel
Strand 8	H	315	322	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	228	229	first strand
Strand 2	E	276	277	anti-parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	80	85	first strand
Strand 2	F	93	100	anti-parallel
Strand 3	F	166	172	anti-parallel
Strand 4	F	107	112	parallel
Strand 5	F	195	198	parallel
Strand 6	F	373	374	parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	128	129	first strand
Strand 2	F	133	135	anti-parallel
Strand 3	F	391	393	anti-parallel
Strand 4	F	380	382	anti-parallel
Strand 5	F	202	203	parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	208	210	first strand
Strand 2	F	352	354	parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	212	213	first strand
Strand 2	F	327	328	anti-parallel

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There are 8 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	315	321	first strand
Strand 2	F	215	224	anti-parallel
Strand 3	F	280	289	anti-parallel
Strand 4	F	262	270	anti-parallel
Strand 5	G	262	270	anti-parallel
Strand 6	G	280	289	anti-parallel
Strand 7	G	215	224	anti-parallel
Strand 8	G	315	322	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	228	229	first strand
Strand 2	F	276	277	anti-parallel

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There are 6 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	80	85	first strand
Strand 2	G	93	100	anti-parallel
Strand 3	G	166	172	anti-parallel
Strand 4	G	107	112	parallel
Strand 5	G	195	198	parallel
Strand 6	G	373	374	parallel

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There are 5 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	128	129	first strand
Strand 2	G	133	135	anti-parallel
Strand 3	G	391	393	anti-parallel
Strand 4	G	380	382	anti-parallel
Strand 5	G	202	203	parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	208	210	first strand
Strand 2	G	352	354	parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	212	213	first strand
Strand 2	G	327	328	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	228	229	first strand
Strand 2	G	276	277	anti-parallel

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There are 6 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	80	85	first strand
Strand 2	H	93	100	anti-parallel
Strand 3	H	166	172	anti-parallel
Strand 4	H	107	112	parallel
Strand 5	H	195	198	parallel
Strand 6	H	373	374	parallel

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There are 5 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	128	129	first strand
Strand 2	H	133	135	anti-parallel
Strand 3	H	391	393	anti-parallel
Strand 4	H	380	382	anti-parallel
Strand 5	H	202	203	parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	208	210	first strand
Strand 2	H	352	354	parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	212	213	first strand
Strand 2	H	327	328	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	228	229	first strand
Strand 2	H	276	277	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6XJ5

Analysis of interatomic Contacts of Structural Units in PDB entry:
6XJ5