Analysis of interatomic Contacts of Structural Units in PDB entry:
6XJ7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6XJ7 entry

There are 2 chains in PDB entry 6XJ7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 33GLN 325
B
 VAL 36GLN 325
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 6XJ7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
39 42Right-handed 310
Helix 2
AA2
A
43 52Right-handed alpha
Helix 3
AA3
A
127 131Right-handed 310
Helix 4
AA4
A
141 147Right-handed alpha
Helix 5
AA5
A
178 190Right-handed alpha
Helix 6
AA6
A
207 227Right-handed alpha
Helix 7
AA7
A
229 236Right-handed alpha
Helix 8
AA8
A
249 262Right-handed alpha
Helix 9
AA9
B
39 42Right-handed 310
Helix 10
AB1
B
43 52Right-handed alpha
Helix 11
AB2
B
127 131Right-handed 310
Helix 12
AB3
B
141 147Right-handed alpha
Helix 13
AB4
B
178 190Right-handed alpha
Helix 14
AB5
B
207 227Right-handed alpha
Helix 15
AB6
B
229 236Right-handed alpha
Helix 16
AB7
B
249 263Right-handed alpha
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There are 6 sheets in PDB entry 6XJ7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 61first strand
Strand 2
A
268 278anti-parallel
Strand 3
A
286 297anti-parallel
Strand 4
A
301 313anti-parallel
Strand 5
B
301 313anti-parallel
Strand 6
B
287 298anti-parallel
Strand 7
B
268 279anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
319 325first strand
Strand 2
A
301 313anti-parallel
Strand 3
B
301 313anti-parallel
Strand 4
B
319 325anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 94first strand
Strand 2
A
76 83anti-parallel
Strand 3
A
65 71anti-parallel
Strand 4
A
193 199parallel
Strand 5
A
115 118anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 136first strand
Strand 2
A
155 157anti-parallel
Strand 3
A
175 176parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
86 93first strand
Strand 2
B
76 83anti-parallel
Strand 3
B
65 71anti-parallel
Strand 4
B
193 199parallel
Strand 5
B
115 118anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
134 136first strand
Strand 2
B
155 157anti-parallel
Strand 3
B
175 176parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il