Analysis of interatomic Contacts of Structural Units in PDB entry:
6XJ9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6XJ9 entry

There are 2 chains in PDB entry 6XJ9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 46	LYS 778
B	THR 50	LYS 778

There are 43 helices in PDB entry 6XJ9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	151	155	Right-handed 310
Helix 2	AA2	A	255	267	Right-handed alpha
Helix 3	AA3	A	336	340	Right-handed 310
Helix 4	AA4	A	360	365	Right-handed alpha
Helix 5	AA5	A	371	376	Right-handed alpha
Helix 6	AA6	A	386	390	Right-handed 310
Helix 7	AA7	A	410	421	Right-handed alpha
Helix 8	AA8	A	422	425	Right-handed 310
Helix 9	AA9	A	426	443	Right-handed alpha
Helix 10	AB1	A	452	456	Right-handed 310
Helix 11	AB2	A	491	510	Right-handed alpha
Helix 12	AB3	A	531	536	Right-handed alpha
Helix 13	AB4	A	536	544	Right-handed alpha
Helix 14	AB5	A	550	565	Right-handed alpha
Helix 15	AB6	A	566	575	Right-handed alpha
Helix 16	AB7	A	580	587	Right-handed alpha
Helix 17	AB8	A	597	624	Right-handed alpha
Helix 18	AB9	A	640	649	Right-handed alpha
Helix 19	AC1	A	664	669	Right-handed alpha
Helix 20	AC2	A	670	674	Right-handed 310
Helix 21	AC3	A	687	691	Right-handed 310
Helix 22	AC4	A	702	719	Right-handed alpha
Helix 23	AC5	A	758	778	Right-handed alpha
Helix 24	AC6	B	255	269	Right-handed alpha
Helix 25	AC7	B	371	376	Right-handed alpha
Helix 26	AC8	B	386	390	Right-handed 310
Helix 27	AC9	B	410	421	Right-handed alpha
Helix 28	AD1	B	422	425	Right-handed 310
Helix 29	AD2	B	426	443	Right-handed alpha
Helix 30	AD3	B	452	456	Right-handed 310
Helix 31	AD4	B	491	510	Right-handed alpha
Helix 32	AD5	B	531	536	Right-handed alpha
Helix 33	AD6	B	536	544	Right-handed alpha
Helix 34	AD7	B	550	565	Right-handed alpha
Helix 35	AD8	B	566	574	Right-handed alpha
Helix 36	AD9	B	580	587	Right-handed alpha
Helix 37	AE1	B	597	624	Right-handed alpha
Helix 38	AE2	B	640	649	Right-handed alpha
Helix 39	AE3	B	664	669	Right-handed alpha
Helix 40	AE4	B	670	674	Right-handed 310
Helix 41	AE5	B	687	691	Right-handed 310
Helix 42	AE6	B	702	719	Right-handed alpha
Helix 43	AE7	B	758	778	Right-handed alpha

There are 17 sheets in PDB entry 6XJ9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	52	first strand
Strand 2	A	213	224	anti-parallel
Strand 3	A	72	77	anti-parallel
Strand 4	A	64	69	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	52	first strand
Strand 2	A	213	224	anti-parallel
Strand 3	A	103	111	anti-parallel
Strand 4	A	140	148	anti-parallel
Strand 5	A	183	184	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	59	62	first strand
Strand 2	A	84	89	anti-parallel
Strand 3	A	199	207	anti-parallel
Strand 4	A	117	125	anti-parallel
Strand 5	A	130	137	anti-parallel
Strand 6	A	186	190	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	296	300	first strand
Strand 2	A	303	307	anti-parallel
Strand 3	A	313	314	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	316	319	first strand
Strand 2	A	723	728	parallel
Strand 3	A	678	680	parallel
Strand 4	A	654	657	parallel
Strand 5	A	634	635	parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	329	330	first strand
Strand 2	A	406	409	anti-parallel
Strand 3	A	392	395	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	333	334	first strand
Strand 2	A	368	369	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	463	467	first strand
Strand 2	A	515	520	parallel
Strand 3	A	628	629	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	475	477	first strand
Strand 2	A	485	487	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	62	first strand
Strand 2	B	84	89	anti-parallel
Strand 3	B	199	207	anti-parallel
Strand 4	B	117	125	anti-parallel
Strand 5	B	130	137	anti-parallel
Strand 6	B	186	190	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	64	69	first strand
Strand 2	B	72	77	anti-parallel
Strand 3	B	213	224	anti-parallel
Strand 4	B	103	111	anti-parallel
Strand 5	B	140	148	anti-parallel
Strand 6	B	183	184	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	296	300	first strand
Strand 2	B	303	307	anti-parallel
Strand 3	B	313	314	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	316	319	first strand
Strand 2	B	723	728	parallel
Strand 3	B	678	680	parallel
Strand 4	B	654	657	parallel
Strand 5	B	634	635	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	329	330	first strand
Strand 2	B	406	409	anti-parallel
Strand 3	B	392	395	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	333	334	first strand
Strand 2	B	368	369	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	463	467	first strand
Strand 2	B	515	520	parallel
Strand 3	B	628	629	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	475	477	first strand
Strand 2	B	485	487	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6XJ9

Analysis of interatomic Contacts of Structural Units in PDB entry:
6XJ9