Analysis of interatomic Contacts of Structural Units in PDB entry:
6XJA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6XJA entry

There are 5 chains in PDB entry 6XJA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
P	GLY 665	LYS 1963
A	CYS 242	ARG 450
B	CYS 241	ARG 450
L	ALA 1	CYS 219
H	ALA 1	SER 232

There are 48 helices in PDB entry 6XJA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	P	782	793	Right-handed alpha
Helix 2	AA2	P	1010	1015	Right-handed alpha
Helix 3	AA3	P	1075	1083	Right-handed alpha
Helix 4	AA4	P	1119	1128	Right-handed alpha
Helix 5	AA5	P	1134	1144	Right-handed alpha
Helix 6	AA6	P	1169	1174	Right-handed alpha
Helix 7	AA7	P	1211	1213	Right-handed 310
Helix 8	AA8	P	1225	1238	Right-handed alpha
Helix 9	AA9	P	1243	1250	Right-handed alpha
Helix 10	AB1	P	1263	1273	Right-handed alpha
Helix 11	AB2	P	1273	1286	Right-handed alpha
Helix 12	AB3	P	1292	1306	Right-handed alpha
Helix 13	AB4	P	1306	1320	Right-handed alpha
Helix 14	AB5	P	1347	1357	Right-handed alpha
Helix 15	AB6	P	1367	1375	Right-handed alpha
Helix 16	AB7	P	1384	1396	Right-handed alpha
Helix 17	AB8	P	1401	1410	Right-handed alpha
Helix 18	AB9	P	1421	1430	Right-handed alpha
Helix 19	AC1	P	1438	1444	Right-handed alpha
Helix 20	AC2	P	1450	1452	Right-handed 310
Helix 21	AC3	P	1453	1459	Right-handed alpha
Helix 22	AC4	P	1480	1482	Right-handed 310
Helix 23	AC5	P	1490	1519	Right-handed alpha
Helix 24	AC6	P	1523	1527	Right-handed 310
Helix 25	AC7	P	1558	1564	Right-handed alpha
Helix 26	AC8	P	1595	1610	Right-handed alpha
Helix 27	AC9	P	1658	1662	Right-handed 310
Helix 28	AD1	P	1669	1674	Right-handed alpha
Helix 29	AD2	P	1676	1705	Right-handed alpha
Helix 30	AD3	P	1707	1714	Right-handed alpha
Helix 31	AD4	P	1742	1748	Right-handed alpha
Helix 32	AD5	P	1751	1758	Right-handed alpha
Helix 33	AD6	P	1798	1812	Right-handed alpha
Helix 34	AD7	P	1817	1823	Right-handed alpha
Helix 35	AD8	P	1826	1834	Right-handed alpha
Helix 36	AD9	P	1848	1857	Right-handed alpha
Helix 37	AE1	P	1863	1880	Right-handed alpha
Helix 38	AE2	P	1904	1921	Right-handed alpha
Helix 39	AE3	P	1930	1933	Right-handed 310
Helix 40	AE4	P	1934	1951	Right-handed alpha
Helix 41	AE5	A	252	259	Right-handed alpha
Helix 42	AE6	A	355	360	Right-handed alpha
Helix 43	AE7	A	421	426	Right-handed alpha
Helix 44	AE8	B	253	259	Right-handed alpha
Helix 45	AE9	B	311	318	Right-handed alpha
Helix 46	AF1	B	420	427	Right-handed alpha
Helix 47	AF2	L	187	194	Right-handed alpha
Helix 48	AF3	H	53	57	Right-handed 310

There are 28 sheets in PDB entry 6XJA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	699	700	first strand
Strand 2	P	687	692	anti-parallel
Strand 3	P	715	719	anti-parallel
Strand 4	P	726	735	anti-parallel
Strand 5	P	744	748	anti-parallel
Strand 6	P	765	768	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	699	700	first strand
Strand 2	P	687	692	anti-parallel
Strand 3	P	715	719	anti-parallel
Strand 4	P	726	735	anti-parallel
Strand 5	P	1287	1288	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	755	757	first strand
Strand 2	P	760	762	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	797	799	first strand
Strand 2	P	827	829	parallel
Strand 3	P	853	855	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	804	805	first strand
Strand 2	P	838	839	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	858	866	first strand
Strand 2	P	887	894	parallel
Strand 3	P	914	915	parallel
Strand 4	P	949	950	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	858	866	first strand
Strand 2	P	887	894	parallel
Strand 3	P	919	921	parallel
Strand 4	P	955	956	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	870	871	first strand
Strand 2	P	898	899	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	874	877	first strand
Strand 2	P	902	905	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	883	884	first strand
Strand 2	P	910	911	parallel
Strand 3	P	944	946	parallel
Strand 4	P	977	979	parallel
Strand 5	P	1016	1018	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	930	931	first strand
Strand 2	P	964	965	parallel
Strand 3	P	995	996	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	1020	1021	first strand
Strand 2	P	1045	1046	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	1159	1161	first strand
Strand 2	P	1180	1184	anti-parallel
Strand 3	P	1190	1197	anti-parallel
Strand 4	P	1207	1209	anti-parallel
Strand 5	P	1214	1216	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	1324	1325	first strand
Strand 2	P	1328	1329	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	1413	1417	first strand
Strand 2	P	1465	1470	parallel
Strand 3	P	1473	1478	anti-parallel
Strand 4	P	1532	1534	parallel
Strand 5	P	1586	1588	parallel
Strand 6	P	1579	1580	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	1734	1739	first strand
Strand 2	P	1715	1722	anti-parallel
Strand 3	P	1760	1762	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	1836	1839	first strand
Strand 2	P	1842	1845	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	245	246	first strand
Strand 2	A	265	269	anti-parallel
Strand 3	A	305	307	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	322	325	first strand
Strand 2	A	334	337	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	401	402	first strand
Strand 2	B	411	412	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	20	21	first strand
Strand 2	L	78	79	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	58	59	first strand
Strand 2	L	50	54	anti-parallel
Strand 3	L	40	43	anti-parallel
Strand 4	L	90	92	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	119	123	first strand
Strand 2	L	138	144	anti-parallel
Strand 3	L	178	184	anti-parallel
Strand 4	L	164	168	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	158	160	first strand
Strand 2	L	150	155	anti-parallel
Strand 3	L	196	202	anti-parallel
Strand 4	L	210	215	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	18	22	first strand
Strand 2	H	81	85	anti-parallel
Strand 3	H	72	73	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	95	96	first strand
Strand 2	H	113	114	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	126	130	first strand
Strand 2	H	140	150	anti-parallel
Strand 3	H	183	192	anti-parallel
Strand 4	H	171	172	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	157	160	first strand
Strand 2	H	201	207	anti-parallel
Strand 3	H	217	219	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6XJA

Analysis of interatomic Contacts of Structural Units in PDB entry:
6XJA