Analysis of interatomic Contacts of Structural Units in PDB entry:
6XJM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6XJM entry

There are 4 chains in PDB entry 6XJM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 2	GLY 227
B	MET 1	GLY 227
C	MET 1	THR 228
D	MET 1	VAL 230

There are 51 helices in PDB entry 6XJM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	20	22	Right-handed 310
Helix 2	AA2	A	32	37	Right-handed alpha
Helix 3	AA3	A	40	45	Right-handed alpha
Helix 4	AA4	A	49	54	Right-handed alpha
Helix 5	AA5	A	55	70	Right-handed alpha
Helix 6	AA6	A	88	98	Right-handed alpha
Helix 7	AA7	A	116	120	Right-handed 310
Helix 8	AA8	A	122	126	Right-handed 310
Helix 9	AA9	A	146	155	Right-handed alpha
Helix 10	AB1	A	168	181	Right-handed alpha
Helix 11	AB2	A	195	208	Right-handed alpha
Helix 12	AB3	A	209	211	Right-handed 310
Helix 13	AB4	A	218	227	Right-handed alpha
Helix 14	AB5	B	20	22	Right-handed 310
Helix 15	AB6	B	32	37	Right-handed alpha
Helix 16	AB7	B	40	45	Right-handed alpha
Helix 17	AB8	B	49	54	Right-handed alpha
Helix 18	AB9	B	55	70	Right-handed alpha
Helix 19	AC1	B	88	98	Right-handed alpha
Helix 20	AC2	B	116	120	Right-handed 310
Helix 21	AC3	B	122	126	Right-handed 310
Helix 22	AC4	B	146	154	Right-handed alpha
Helix 23	AC5	B	168	180	Right-handed alpha
Helix 24	AC6	B	195	208	Right-handed alpha
Helix 25	AC7	B	218	227	Right-handed alpha
Helix 26	AC8	C	20	22	Right-handed 310
Helix 27	AC9	C	32	37	Right-handed alpha
Helix 28	AD1	C	40	45	Right-handed alpha
Helix 29	AD2	C	49	54	Right-handed alpha
Helix 30	AD3	C	55	70	Right-handed alpha
Helix 31	AD4	C	88	98	Right-handed alpha
Helix 32	AD5	C	116	120	Right-handed 310
Helix 33	AD6	C	122	126	Right-handed 310
Helix 34	AD7	C	146	154	Right-handed alpha
Helix 35	AD8	C	168	180	Right-handed alpha
Helix 36	AD9	C	195	208	Right-handed alpha
Helix 37	AE1	C	209	211	Right-handed 310
Helix 38	AE2	C	218	226	Right-handed alpha
Helix 39	AE3	D	20	22	Right-handed 310
Helix 40	AE4	D	32	37	Right-handed alpha
Helix 41	AE5	D	40	45	Right-handed alpha
Helix 42	AE6	D	49	54	Right-handed alpha
Helix 43	AE7	D	55	70	Right-handed alpha
Helix 44	AE8	D	88	98	Right-handed alpha
Helix 45	AE9	D	116	120	Right-handed 310
Helix 46	AF1	D	122	126	Right-handed 310
Helix 47	AF2	D	146	154	Right-handed alpha
Helix 48	AF3	D	168	180	Right-handed alpha
Helix 49	AF4	D	195	208	Right-handed alpha
Helix 50	AF5	D	209	211	Right-handed 310
Helix 51	AF6	D	218	227	Right-handed alpha

There are 8 sheets in PDB entry 6XJM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	133	136	first strand
Strand 2	A	72	78	parallel
Strand 3	A	24	29	parallel
Strand 4	A	158	164	parallel
Strand 5	A	183	192	parallel
Strand 6	A	215	217	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	105	106	first strand
Strand 2	A	109	110	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	133	136	first strand
Strand 2	B	72	78	parallel
Strand 3	B	24	29	parallel
Strand 4	B	158	163	parallel
Strand 5	B	183	187	parallel
Strand 6	B	215	217	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	105	106	first strand
Strand 2	B	109	110	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	133	136	first strand
Strand 2	C	72	78	parallel
Strand 3	C	24	29	parallel
Strand 4	C	158	164	parallel
Strand 5	C	183	192	parallel
Strand 6	C	215	217	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	105	106	first strand
Strand 2	C	109	110	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	133	136	first strand
Strand 2	D	72	78	parallel
Strand 3	D	24	29	parallel
Strand 4	D	158	163	parallel
Strand 5	D	183	187	parallel
Strand 6	D	215	217	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	105	106	first strand
Strand 2	D	109	110	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6XJM

Analysis of interatomic Contacts of Structural Units in PDB entry:
6XJM