Analysis of interatomic Contacts of Structural Units in PDB entry:
6XJN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6XJN entry

There is 1 chain in PDB entry 6XJN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 18LYS 439
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 6XJN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
49 58Right-handed alpha
Helix 2
AA2
A
79 93Right-handed alpha
Helix 3
AA3
A
158 171Right-handed alpha
Helix 4
AA4
A
183 189Right-handed alpha
Helix 5
AA5
A
190 192Right-handed 310
Helix 6
AA6
A
193 205Right-handed alpha
Helix 7
AA7
A
228 240Right-handed alpha
Helix 8
AA8
A
249 260Right-handed alpha
Helix 9
AA9
A
273 278Right-handed alpha
Helix 10
AB1
A
285 289Right-handed 310
Helix 11
AB2
A
290 306Right-handed alpha
Helix 12
AB3
A
307 310Right-handed 310
Helix 13
AB4
A
321 337Right-handed alpha
Helix 14
AB5
A
343 376Right-handed alpha
Helix 15
AB6
A
383 405Right-handed alpha
Helix 16
AB7
A
410 437Right-handed alpha
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There are 4 sheets in PDB entry 6XJN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 21first strand
Strand 2
A
28 30anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 48first strand
Strand 2
A
34 40anti-parallel
Strand 3
A
122 126anti-parallel
Strand 4
A
139 149anti-parallel
Strand 5
A
130 133anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
46 48first strand
Strand 2
A
34 40anti-parallel
Strand 3
A
122 126anti-parallel
Strand 4
A
139 149anti-parallel
Strand 5
A
67 75parallel
Strand 6
A
173 179parallel
Strand 7
A
209 217parallel
Strand 8
A
261 268parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
314 315first strand
Strand 2
A
318 319anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il