Analysis of interatomic Contacts of Structural Units in PDB entry:
6XJO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6XJO entry

There are 2 chains in PDB entry 6XJO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLN 333
B
 SER 22GLN 333
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 6XJO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 22Right-handed alpha
Helix 2
AA2
A
42 51Right-handed alpha
Helix 3
AA3
A
72 89Right-handed alpha
Helix 4
AA4
A
153 166Right-handed alpha
Helix 5
AA5
A
179 197Right-handed alpha
Helix 6
AA6
A
224 243Right-handed alpha
Helix 7
AA7
A
244 247Right-handed 310
Helix 8
AA8
A
248 256Right-handed alpha
Helix 9
AA9
A
269 275Right-handed alpha
Helix 10
AB1
A
281 285Right-handed 310
Helix 11
AB2
A
286 302Right-handed alpha
Helix 12
AB3
A
303 306Right-handed 310
Helix 13
AB4
A
317 333Right-handed alpha
Helix 14
AB5
B
42 51Right-handed alpha
Helix 15
AB6
B
72 89Right-handed alpha
Helix 16
AB7
B
155 166Right-handed alpha
Helix 17
AB8
B
179 196Right-handed alpha
Helix 18
AB9
B
224 243Right-handed alpha
Helix 19
AC1
B
244 247Right-handed 310
Helix 20
AC2
B
248 256Right-handed alpha
Helix 21
AC3
B
269 275Right-handed alpha
Helix 22
AC4
B
281 285Right-handed 310
Helix 23
AC5
B
286 302Right-handed alpha
Helix 24
AC6
B
303 306Right-handed 310
Helix 25
AC7
B
317 333Right-handed alpha
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There are 6 sheets in PDB entry 6XJO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 41first strand
Strand 2
A
26 32anti-parallel
Strand 3
A
118 122anti-parallel
Strand 4
A
135 144anti-parallel
Strand 5
A
126 129anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 41first strand
Strand 2
A
26 32anti-parallel
Strand 3
A
118 122anti-parallel
Strand 4
A
135 144anti-parallel
Strand 5
A
60 67parallel
Strand 6
A
169 175parallel
Strand 7
A
205 215parallel
Strand 8
A
257 266parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
310 311first strand
Strand 2
A
314 315anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
40 41first strand
Strand 2
B
26 31anti-parallel
Strand 3
B
118 122anti-parallel
Strand 4
B
135 144anti-parallel
Strand 5
B
126 129anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
40 41first strand
Strand 2
B
26 31anti-parallel
Strand 3
B
118 122anti-parallel
Strand 4
B
135 144anti-parallel
Strand 5
B
60 67parallel
Strand 6
B
169 175parallel
Strand 7
B
205 213parallel
Strand 8
B
257 264parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
310 311first strand
Strand 2
B
314 315anti-parallel
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