Analysis of interatomic Contacts of Structural Units in PDB entry:
6XJV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6XJV entry

There are 9 chains in PDB entry 6XJV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 74	GLN 346
B	ILE 49	GLU 101
C	ASP 74	HIS 341
D	VAL 48	ASP 96
E	ASP 74	PRO 343
F	VAL 48	PRO 100
G	VAL 75	ASP 336
H	VAL 48	HIS 95
Q	ASP 108	ARG 109

There are138 helices in PDB entry 6XJV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	107	119	Right-handed alpha
Helix 2	AA2	A	140	145	Right-handed alpha
Helix 3	AA3	A	172	191	Right-handed alpha
Helix 4	AA4	A	192	215	Right-handed alpha
Helix 5	AA5	A	216	256	Right-handed alpha
Helix 6	AA6	A	259	262	Right-handed 310
Helix 7	AA7	A	263	285	Right-handed alpha
Helix 8	AA8	A	290	310	Right-handed alpha
Helix 9	AA9	A	314	340	Right-handed alpha
Helix 10	AB1	B	65	95	Right-handed alpha
Helix 11	AB2	C	91	94	Right-handed 310
Helix 12	AB3	C	107	119	Right-handed alpha
Helix 13	AB4	C	140	146	Right-handed alpha
Helix 14	AB5	C	171	190	Right-handed alpha
Helix 15	AB6	C	191	215	Right-handed alpha
Helix 16	AB7	C	217	255	Right-handed alpha
Helix 17	AB8	C	259	286	Right-handed alpha
Helix 18	AB9	C	291	311	Right-handed alpha
Helix 19	AC1	C	313	335	Right-handed alpha
Helix 20	AC2	D	65	95	Right-handed alpha
Helix 21	AC3	E	107	119	Right-handed alpha
Helix 22	AC4	E	140	145	Right-handed alpha
Helix 23	AC5	E	169	190	Right-handed alpha
Helix 24	AC6	E	191	256	Right-handed alpha
Helix 25	AC7	E	259	285	Right-handed alpha
Helix 26	AC8	E	290	311	Right-handed alpha
Helix 27	AC9	E	313	335	Right-handed alpha
Helix 28	AD1	F	65	95	Right-handed alpha
Helix 29	AD2	G	107	119	Right-handed alpha
Helix 30	AD3	G	140	145	Right-handed alpha
Helix 31	AD4	G	178	191	Right-handed alpha
Helix 32	AD5	G	192	257	Right-handed alpha
Helix 33	AD6	G	263	286	Right-handed alpha
Helix 34	AD7	G	290	310	Right-handed alpha
Helix 35	AD8	G	313	334	Right-handed alpha
Helix 36	AD9	H	65	93	Right-handed alpha
Helix 37	AE1	Q	109	122	Right-handed alpha
Helix 38	AE2	Q	123	131	Right-handed alpha
Helix 39	AE3	Q	148	157	Right-handed alpha
Helix 40	AE4	Q	194	199	Right-handed alpha
Helix 41	AE5	Q	206	217	Right-handed alpha
Helix 42	AE6	Q	219	231	Right-handed alpha
Helix 43	AE7	Q	239	252	Right-handed alpha
Helix 44	AE8	Q	277	283	Right-handed alpha
Helix 45	AE9	Q	292	315	Right-handed alpha
Helix 46	AF1	Q	323	336	Right-handed alpha
Helix 47	AF2	Q	340	353	Right-handed alpha
Helix 48	AF3	Q	361	373	Right-handed alpha
Helix 49	AF4	Q	373	386	Right-handed alpha
Helix 50	AF5	Q	392	404	Right-handed alpha
Helix 51	AF6	Q	409	421	Right-handed alpha
Helix 52	AF7	Q	433	443	Right-handed alpha
Helix 53	AF8	R	86	93	Right-handed alpha
Helix 54	AF9	R	105	115	Right-handed alpha
Helix 55	AG1	R	128	137	Right-handed alpha
Helix 56	AG2	R	138	142	Right-handed 310
Helix 57	AG3	R	147	153	Right-handed alpha
Helix 58	AG4	R	159	172	Right-handed alpha
Helix 59	AG5	R	176	184	Right-handed alpha
Helix 60	AG6	R	193	208	Right-handed alpha
Helix 61	AG7	R	232	240	Right-handed alpha
Helix 62	AG8	R	248	272	Right-handed alpha
Helix 63	AG9	R	279	288	Right-handed alpha
Helix 64	AH1	R	292	307	Right-handed alpha
Helix 65	AH2	R	314	325	Right-handed alpha
Helix 66	AH3	R	327	341	Right-handed alpha
Helix 67	AH4	R	346	359	Right-handed alpha
Helix 68	AH5	R	363	375	Right-handed alpha
Helix 69	AH6	R	383	395	Right-handed alpha
Helix 70	AH7	I	107	119	Right-handed alpha
Helix 71	AH8	I	140	145	Right-handed alpha
Helix 72	AH9	I	172	191	Right-handed alpha
Helix 73	AI1	I	191	256	Right-handed alpha
Helix 74	AI2	I	259	262	Right-handed 310
Helix 75	AI3	I	263	285	Right-handed alpha
Helix 76	AI4	I	290	310	Right-handed alpha
Helix 77	AI5	I	314	340	Right-handed alpha
Helix 78	AI6	J	65	95	Right-handed alpha
Helix 79	AI7	K	91	94	Right-handed 310
Helix 80	AI8	K	107	119	Right-handed alpha
Helix 81	AI9	K	140	146	Right-handed alpha
Helix 82	AJ1	K	171	190	Right-handed alpha
Helix 83	AJ2	K	191	215	Right-handed alpha
Helix 84	AJ3	K	217	255	Right-handed alpha
Helix 85	AJ4	K	259	286	Right-handed alpha
Helix 86	AJ5	K	290	311	Right-handed alpha
Helix 87	AJ6	K	313	335	Right-handed alpha
Helix 88	AJ7	L	65	95	Right-handed alpha
Helix 89	AJ8	M	107	119	Right-handed alpha
Helix 90	AJ9	M	140	145	Right-handed alpha
Helix 91	AK1	M	169	190	Right-handed alpha
Helix 92	AK2	M	191	213	Right-handed alpha
Helix 93	AK3	M	213	256	Right-handed alpha
Helix 94	AK4	M	259	285	Right-handed alpha
Helix 95	AK5	M	290	311	Right-handed alpha
Helix 96	AK6	M	313	335	Right-handed alpha
Helix 97	AK7	N	65	95	Right-handed alpha
Helix 98	AK8	O	107	119	Right-handed alpha
Helix 99	AK9	O	140	145	Right-handed alpha
Helix 100	AL1	O	178	191	Right-handed alpha
Helix 101	AL2	O	192	257	Right-handed alpha
Helix 102	AL3	O	263	286	Right-handed alpha
Helix 103	AL4	O	290	310	Right-handed alpha
Helix 104	AL5	O	313	334	Right-handed alpha
Helix 105	AL6	P	65	93	Right-handed alpha
Helix 106	AL7	S	109	122	Right-handed alpha
Helix 107	AL8	S	123	132	Right-handed alpha
Helix 108	AL9	S	150	157	Right-handed alpha
Helix 109	AM1	S	194	199	Right-handed alpha
Helix 110	AM2	S	206	217	Right-handed alpha
Helix 111	AM3	S	219	231	Right-handed alpha
Helix 112	AM4	S	239	252	Right-handed alpha
Helix 113	AM5	S	278	283	Right-handed alpha
Helix 114	AM6	S	292	315	Right-handed alpha
Helix 115	AM7	S	323	336	Right-handed alpha
Helix 116	AM8	S	339	353	Right-handed alpha
Helix 117	AM9	S	361	373	Right-handed alpha
Helix 118	AN1	S	373	386	Right-handed alpha
Helix 119	AN2	S	392	403	Right-handed alpha
Helix 120	AN3	S	409	421	Right-handed alpha
Helix 121	AN4	S	433	443	Right-handed alpha
Helix 122	AN5	T	86	93	Right-handed alpha
Helix 123	AN6	T	105	115	Right-handed alpha
Helix 124	AN7	T	128	137	Right-handed alpha
Helix 125	AN8	T	138	142	Right-handed 310
Helix 126	AN9	T	147	153	Right-handed alpha
Helix 127	AO1	T	159	172	Right-handed alpha
Helix 128	AO2	T	176	184	Right-handed alpha
Helix 129	AO3	T	193	208	Right-handed alpha
Helix 130	AO4	T	232	240	Right-handed alpha
Helix 131	AO5	T	248	272	Right-handed alpha
Helix 132	AO6	T	279	288	Right-handed alpha
Helix 133	AO7	T	292	307	Right-handed alpha
Helix 134	AO8	T	314	325	Right-handed alpha
Helix 135	AO9	T	327	341	Right-handed alpha
Helix 136	AP1	T	346	359	Right-handed alpha
Helix 137	AP2	T	363	375	Right-handed alpha
Helix 138	AP3	T	383	395	Right-handed alpha

There are 18 sheets in PDB entry 6XJV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	80	first strand
Strand 2	A	83	89	anti-parallel
Strand 3	A	96	100	anti-parallel
Strand 4	C	134	135	parallel
Strand 5	C	126	128	anti-parallel
Strand 6	C	149	152	anti-parallel
Strand 7	C	157	160	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	126	128	first strand
Strand 2	A	149	152	anti-parallel
Strand 3	A	157	160	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	76	80	first strand
Strand 2	C	83	89	anti-parallel
Strand 3	C	96	100	anti-parallel
Strand 4	E	134	135	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	76	80	first strand
Strand 2	E	83	89	anti-parallel
Strand 3	E	96	100	anti-parallel
Strand 4	G	134	135	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	126	128	first strand
Strand 2	E	149	153	anti-parallel
Strand 3	E	156	160	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	76	78	first strand
Strand 2	G	85	88	anti-parallel
Strand 3	G	97	100	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	126	128	first strand
Strand 2	G	150	152	anti-parallel
Strand 3	G	157	159	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	321	322	first strand
Strand 2	Q	359	360	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	101	103	first strand
Strand 2	R	96	98	anti-parallel
Strand 3	R	125	126	parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	76	80	first strand
Strand 2	I	83	89	anti-parallel
Strand 3	I	96	100	anti-parallel
Strand 4	K	134	135	parallel
Strand 5	K	126	128	anti-parallel
Strand 6	K	149	152	anti-parallel
Strand 7	K	157	160	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	126	128	first strand
Strand 2	I	149	152	anti-parallel
Strand 3	I	157	160	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	76	80	first strand
Strand 2	K	83	89	anti-parallel
Strand 3	K	96	100	anti-parallel
Strand 4	M	134	135	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	76	80	first strand
Strand 2	M	83	89	anti-parallel
Strand 3	M	96	100	anti-parallel
Strand 4	O	134	135	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	126	128	first strand
Strand 2	M	149	153	anti-parallel
Strand 3	M	156	160	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	76	78	first strand
Strand 2	O	85	88	anti-parallel
Strand 3	O	97	100	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	O	126	128	first strand
Strand 2	O	150	152	anti-parallel
Strand 3	O	157	159	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	321	322	first strand
Strand 2	S	359	360	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	101	103	first strand
Strand 2	T	96	98	anti-parallel
Strand 3	T	125	126	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6XJV

Analysis of interatomic Contacts of Structural Units in PDB entry:
6XJV