Analysis of interatomic Contacts of Structural Units in PDB entry:
6XK5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6XK5 entry

There is 1 chain in PDB entry 6XK5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 2GLU 363
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 6XK5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 22Right-handed alpha
Helix 2
AA2
A
24 26Right-handed 310
Helix 3
AA3
A
27 43Right-handed alpha
Helix 4
AA4
A
48 62Right-handed alpha
Helix 5
AA5
A
68 75Right-handed 310
Helix 6
AA6
A
85 102Right-handed alpha
Helix 7
AA7
A
103 105Right-handed 310
Helix 8
AA8
A
148 158Right-handed alpha
Helix 9
AA9
A
188 192Right-handed 310
Helix 10
AB1
A
202 209Right-handed 310
Helix 11
AB2
A
241 246Right-handed alpha
Helix 12
AB3
A
257 266Right-handed alpha
Helix 13
AB4
A
271 274Right-handed 310
Helix 14
AB5
A
275 296Right-handed alpha
Helix 15
AB6
A
301 319Right-handed alpha
Helix 16
AB7
A
326 331Right-handed alpha
Helix 17
AB8
A
335 339Right-handed 310
Helix 18
AB9
A
340 344Right-handed 310
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There are 6 sheets in PDB entry 6XK5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 79first strand
Strand 2
A
109 112parallel
Strand 3
A
235 236anti-parallel
Strand 4
A
217 218anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
123 125first strand
Strand 2
A
172 176anti-parallel
Strand 3
A
183 185anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
135 138first strand
Strand 2
A
141 144anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 196first strand
Strand 2
A
211 213anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 230first strand
Strand 2
A
222 225anti-parallel
Strand 3
A
354 356anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
239 240first strand
Strand 2
A
299 300parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il