Analysis of interatomic Contacts of Structural Units in PDB entry:
6XKS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6XKS entry

There are 3 chains in PDB entry 6XKS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 2ASP 145
B
 LEU 2ASP 145
C
 LEU 2ASP 145
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 6XKS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
28 42Right-handed alpha
Helix 2
AA2
A
51 53Right-handed 310
Helix 3
AA3
A
54 61Right-handed alpha
Helix 4
AA4
A
74 79Right-handed alpha
Helix 5
AA5
A
94 98Right-handed 310
Helix 6
AA6
A
110 127Right-handed alpha
Helix 7
AA7
A
128 135Right-handed alpha
Helix 8
AA8
B
28 42Right-handed alpha
Helix 9
AA9
B
51 53Right-handed 310
Helix 10
AB1
B
54 61Right-handed alpha
Helix 11
AB2
B
76 80Right-handed 310
Helix 12
AB3
B
94 98Right-handed 310
Helix 13
AB4
B
110 127Right-handed alpha
Helix 14
AB5
B
128 138Right-handed alpha
Helix 15
AB6
C
28 41Right-handed alpha
Helix 16
AB7
C
51 53Right-handed 310
Helix 17
AB8
C
54 61Right-handed alpha
Helix 18
AB9
C
74 81Right-handed alpha
Helix 19
AC1
C
94 98Right-handed 310
Helix 20
AC2
C
110 127Right-handed alpha
Helix 21
AC3
C
128 138Right-handed alpha
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There are 10 sheets in PDB entry 6XKS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 49first strand
Strand 2
A
5 10parallel
Strand 3
A
66 67parallel
Strand 4
A
105 106anti-parallel
Strand 5
A
82 83anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 14first strand
Strand 2
A
18 20anti-parallel
Strand 3
A
26 27anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 49first strand
Strand 2
B
5 10parallel
Strand 3
B
66 67parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
19 20first strand
Strand 2
B
26 27anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
82 83first strand
Strand 2
B
105 106anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
88 89first strand
Strand 2
B
101 102anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
44 49first strand
Strand 2
C
5 10parallel
Strand 3
C
66 67parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
13 14first strand
Strand 2
C
18 20anti-parallel
Strand 3
C
26 27anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
82 83first strand
Strand 2
C
105 106anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
88 89first strand
Strand 2
C
101 102anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il