Analysis of interatomic Contacts of Structural Units in PDB entry:
6XL1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6XL1 entry

There are 3 chains in PDB entry 6XL1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 373
B
 MET 1LEU 373
C
 A 1 A 4
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 32 helices in PDB entry 6XL1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 29Right-handed alpha
Helix 2
AA2
A
39 45Right-handed alpha
Helix 3
AA3
A
46 56Right-handed alpha
Helix 4
AA4
A
73 88Right-handed alpha
Helix 5
AA5
A
101 113Right-handed alpha
Helix 6
AA6
A
146 154Right-handed alpha
Helix 7
AA7
A
167 172Right-handed alpha
Helix 8
AA8
A
173 179Right-handed alpha
Helix 9
AA9
A
182 195Right-handed alpha
Helix 10
AB1
A
195 205Right-handed alpha
Helix 11
AB2
A
214 220Right-handed alpha
Helix 12
AB3
A
227 238Right-handed alpha
Helix 13
AB4
A
247 254Right-handed alpha
Helix 14
AB5
A
255 270Right-handed alpha
Helix 15
AB6
A
274 276Right-handed 310
Helix 16
AB7
A
314 337Right-handed alpha
Helix 17
AB8
A
353 364Right-handed alpha
Helix 18
AB9
B
14 29Right-handed alpha
Helix 19
AC1
B
39 45Right-handed alpha
Helix 20
AC2
B
46 56Right-handed alpha
Helix 21
AC3
B
73 86Right-handed alpha
Helix 22
AC4
B
101 113Right-handed alpha
Helix 23
AC5
B
146 153Right-handed alpha
Helix 24
AC6
B
167 179Right-handed alpha
Helix 25
AC7
B
182 195Right-handed alpha
Helix 26
AC8
B
195 205Right-handed alpha
Helix 27
AC9
B
214 220Right-handed alpha
Helix 28
AD1
B
227 238Right-handed alpha
Helix 29
AD2
B
246 254Right-handed alpha
Helix 30
AD3
B
255 270Right-handed alpha
Helix 31
AD4
B
314 337Right-handed alpha
Helix 32
AD5
B
353 364Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 6XL1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 68first strand
Strand 2
A
32 38parallel
Strand 3
A
4 9parallel
Strand 4
A
92 96parallel
Strand 5
A
118 122parallel
Strand 6
A
129 133anti-parallel
Strand 7
A
137 139anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 159first strand
Strand 2
A
278 286anti-parallel
Strand 3
A
289 298anti-parallel
Strand 4
A
304 310anti-parallel
Strand 5
A
341 347parallel
Strand 6
A
366 368parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
207 208first strand
Strand 2
A
245 246anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 68first strand
Strand 2
B
32 38parallel
Strand 3
B
4 9parallel
Strand 4
B
92 96parallel
Strand 5
B
118 122parallel
Strand 6
B
129 133anti-parallel
Strand 7
B
137 139anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
157 159first strand
Strand 2
B
273 286anti-parallel
Strand 3
B
289 299anti-parallel
Strand 4
B
304 310anti-parallel
Strand 5
B
341 347parallel
Strand 6
B
366 368parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il